Browse Element(s) Details


OsAffx.1674.1.S1_at

Description gb:NM_184566.1
DB_XREF= gi:34896221
GEN=P0676G08.20
TID=OsAffx.1674.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0676G08.20 (P0676G08.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g395901/11retrotransposon protein, putative, unclassified
LOC_Os08g273501/11transposon protein, putative, unclassified
LOC_Os03g534301/11retrotransposon protein, putative, unclassified
LOC_Os12g275301/11retrotransposon protein, putative, unclassified
LOC_Os02g193901/11retrotransposon protein, putative, unclassified
LOC_Os04g378301/11retrotransposon protein, putative, unclassified
LOC_Os12g203001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g478501/11transposon protein, putative, unclassified
LOC_Os04g034101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39560OsAffx.32098.1.S1_at10/1112+24363395..24367091hypothetical protein
LOC_Os12g39570OsAffx.22940.5.S1_at11/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.2.S1_s_at11/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.2.S1_at9/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.3.S1_x_at9/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.1.S1_s_at8/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.22940.5.S1_x_at8/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570Os.35344.3.S1_x_at6/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570Os.35344.18.S1_x_at5/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39570OsAffx.31552.2.S1_at2/1112+24369302..24374170Transposable element protein, putative, MuDR
LOC_Os12g39580OsAffx.20380.1.S1_x_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39580OsAffx.22927.1.S1_x_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39580OsAffx.22711.4.A1_x_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39580OsAffx.20380.1.S1_at1/1112+24387436..24390846retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.3.S1_x_at3/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.4.S1_x_at2/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.20729.1.S1_x_at2/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.1674.1.S1_at1/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39590OsAffx.21171.4.S1_at1/1112+24391557..24397478retrotransposon protein, putative, unclassified
LOC_Os12g39600NANA12+24406461..24409368retrotransposon protein, putative, unclassified
LOC_Os12g39610NANA12+24410223..24415808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39620Os.46182.1.S1_at11/1112+24421410..24425728Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1674.1.S1_at--954--104310Chr12:16213277..16213298 (22 bp)
TTAGGCGTGCGGCATAACCGCATGC
LOC_Os12g27530
OsAffx.1674.1.S1_at--590--9772Chr12:10170696..10170719 (24 bp)
TAAGGAGCCGAAGACCACCACCGAG
NONE
OsAffx.1674.1.S1_at--995--3352Chr12:10170713..10170733 (21 bp)
CACCGAGCTTTTCGAGCTAGCGGAC
NONE
OsAffx.1674.1.S1_at--262--991Chr01:16585588..16585612 (25 bp)
AGGAGGAACAGGAAGCCGGCCCACT
NONE
OsAffx.1674.1.S1_at--880--1871Chr01:16585619..16585643 (25 bp)
ACGAGGGCTACGTCCTTGCTGCGGA
NONE
OsAffx.1674.1.S1_at--544--2751Chr01:16585794..16585818 (25 bp)
AAGAACTTGGTCGAGCGGTACAGAA
NONE
OsAffx.1674.1.S1_at--212--4091Chr01:16585925..16585949 (25 bp)
CGACGACAGCGATAATCTGGAGTTC
NONE
OsAffx.1674.1.S1_at--381--3911Chr01:16585941..16586123 (25 bp)
CTGGAGTTCCAGAGCGACCACCCGA
NONE
OsAffx.1674.1.S1_at--483--5851Chr01:16586122..16586146 (25 bp)
GACCATGCTCGCTCGAGGTGGGAAA
NONE
OsAffx.1674.1.S1_at--216--7631Chr01:16586141..16586165 (25 bp)
GGGAAATTGGCCCTCGTTGTCTCTC
NONE
OsAffx.1674.1.S1_at--612--4031Chr01:16586179..16586203 (25 bp)
CGTTGTTGACGGTTATTATCGATCA
NONE
Target Sequence 
TTAGGCGTGCGGCATAACCGCATGCTTGAGAAGATCGCCTCTAAGGAGCCGAAGACCACCACCGAGCTTTTCGAGCTAGC
GGACAAGGCGGTGGGACAAGAGGAGGAACAGGAAGCCGGCCCACTCCGACGACGAGGGCTACGTCCTTGCTGCGGACGGT
CCCTCACGGACCCCGCGCAAGGAGAAGGCCACCGGCAACAAGCCGAGCACCAGCCCCCCCCCCCCCCCGGCGAAAGCCGT
TCGGCGGATAAGTGGTGCTCGGTGCACAACACCTATCGGCACAGCCTCGCTGACTACCGCACGGTAAAGAACTTGGTCGA
GCGGTACAGAAAGACCGATGGGGAGAGGCGACAGAGTCGCCGGGAGGGCAAGGCCCCCGCGACCTCCGCTAGCGACCGGC
GAGAGGAGGCCAAGAAAAAGGCCCCCGCCGATGACGACGACGACAGCGATAATCTGGAGTTCCAGAGCGACCACCCGACC
ATGCTCGCTCGAGGTGGGAAATTGGCCCTCGTTGTCTCTCCGACCATCCACAACGTTGTTGACGGTTATTATCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis