Browse Element(s) Details


OsAffx.16763.1.S1_at

Description tigr:9635.m04875
TID=OsAffx.16763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome P450, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4833011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os07g48300OsAffx.28951.1.S1_at11/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48300Os.17977.1.S1_s_at10/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed
LOC_Os07g48340Os.14413.1.S1_at11/117+28887547..28890337Calcium-binding protein CAST, putative, expressed
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16763.1.S1_at--57--1811Chr07:28883984..28884008 (25 bp)
ACCGCCGCGTGGTGCTTGATGCTGC
LOC_Os07g48330
OsAffx.16763.1.S1_at--884--7771Chr07:28883994..28884018 (25 bp)
GGTGCTTGATGCTGCTCGCGCTTCA
LOC_Os07g48330
OsAffx.16763.1.S1_at--5--4911Chr07:28884013..28884037 (25 bp)
GCTTCACCCTGAGTGGCAGGACCGG
LOC_Os07g48330
OsAffx.16763.1.S1_at--755--9311Chr07:28884093..28884117 (25 bp)
TCCCGGCACTGCAGAAGATGAAGAA
LOC_Os07g48330
OsAffx.16763.1.S1_at--282--671Chr07:28884110..28884211 (25 bp)
ATGAAGAACCTGACGATGGTGATCC
LOC_Os07g48330
OsAffx.16763.1.S1_at--624--8371Chr07:28884301..28884325 (25 bp)
GGCGTCAACATCTACGTCCCGGTCT
LOC_Os07g48330
OsAffx.16763.1.S1_at--1151--9491Chr07:28884497..28884521 (25 bp)
TCTCGCTCGTGCTCTGCAGGTTCGA
LOC_Os07g48330
OsAffx.16763.1.S1_at--529--6091Chr07:28884538..28884562 (25 bp)
GAGTACGTGCACTCGCCGGCGCACA
LOC_Os07g48330
OsAffx.16763.1.S1_at--890--4471Chr07:28884552..28884576 (25 bp)
GCCGGCGCACAAGCTCATCGTGGAG
LOC_Os07g48330
OsAffx.16763.1.S1_at--1140--1931Chr07:28884584..28884608 (25 bp)
ACGGCGTGCGCCTTGTGCTCAAGAA
LOC_Os07g48330
OsAffx.16763.1.S1_at--806--7291Chr07:28884589..28884613 (25 bp)
GTGCGCCTTGTGCTCAAGAAAGTGC
LOC_Os07g48330
Target Sequence 
ACCGCCGCGTGGTGCTTGATGCTGCTCGCGCTTCACCCTGAGTGGCAGGACCGGGTGCGAGACGAGGTGCAGGCGGCGTG
CTGCGGCGGCGGCGGACGGTCGCCGGACTTCCCGGCACTGCAGAAGATGAAGAACCTGACGATGGTGATCCAGGAGACGC
TGCGGCTGTACCCGGCGGGCGCGGTGGTGTCGCGGCAGGCGCTGCGGGAGCTCAGCCTCGGCGGCGTGCGCGTGCCGAGG
GGCGTCAACATCTACGTCCCGGTCTCGACGCTGCACCTGGACGCGGAGCTGTGGGGGGGCGGCGCCGGCGCGGCGGAGTT
CGACCCGGCGCGGTTCGCCGACGCCCGGCCGCCGCTGCACGCGTACCTGCCGTTCGGCGCCGGCGCGCGCACCTGCCTCG
GCCAGACCTTCGCCATGGCAGAGCTCAAGGTGCTCCTCTCGCTCGTGCTCTGCAGGTTCGAGGTGGCGCTGTCGCCGGAG
TACGTGCACTCGCCGGCGCACAAGCTCATCGTGGAGGCCGAGCACGGCGTGCGCCTTGTGCTCAAGAAAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis