Browse Element(s) Details


OsAffx.16766.1.S1_at

Description tigr:9635.m04924
TID=OsAffx.16766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4876011/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48690Os.49951.1.S1_at11/117+29160723..29164881expressed protein
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16766.1.S1_at--496--6211Chr07:29191097..29191121 (25 bp)
GAGGCTCATTGCTAGAATTCTGGAT
LOC_Os07g48760
OsAffx.16766.1.S1_at--654--8551Chr07:29191117..29191333 (25 bp)
TGGATCCAAATCCTGCTACTCGGAT
LOC_Os07g48760
OsAffx.16766.1.S1_at--575--4851Chr07:29191131..29191347 (25 bp)
GCTACTCGGATAACTACTTCTCAAG
LOC_Os07g48760
OsAffx.16766.1.S1_at--1151--691Chr07:29191378..29191402 (25 bp)
ATGAGTCCCCTGTTTTCGATGACAA
LOC_Os07g48760
OsAffx.16766.1.S1_at--130--231Chr07:29191403..29191427 (25 bp)
ATATTACCCTTATTTCCACGATGTT
LOC_Os07g48760
OsAffx.16766.1.S1_at--907--5071Chr07:29191581..29191605 (25 bp)
GCAGCCAACCTTGATGAATGCCTTT
LOC_Os07g48760
OsAffx.16766.1.S1_at--1002--5251Chr07:29191596..29191620 (25 bp)
GAATGCCTTTGAGTTGATTTCACTA
LOC_Os07g48760
OsAffx.16766.1.S1_at--793--5611Chr07:29191826..29191850 (25 bp)
GACAAGATTTACATCGCAGTGCCCT
LOC_Os07g48760
OsAffx.16766.1.S1_at--620--5011Chr07:29191841..29191865 (25 bp)
GCAGTGCCCTCCGAAAGAAATCATC
LOC_Os07g48760
OsAffx.16766.1.S1_at--1117--3251Chr07:29192409..29192429 (21 bp)
CAAAAGTTCTACCAAACGCTCTCGA
LOC_Os07g48760
OsAffx.16766.1.S1_at--614--2371Chr07:29192418..29192442 (25 bp)
AAACGCTCTCGACGCAACTAAAAGA
LOC_Os07g48760
Target Sequence 
GAGGCTCATTGCTAGAATTCTGGATCCAAATCCTGCTACTCGGATAACTACTTCTCAAGTGCTACAAGATCAATGGTTCA
AAAAAGGCTATGAGTCCCCTGTTTTCGATGACAAATATTACCCTTATTTCCACGATGTTTATGATGCTTTTGGAGACTCA
GAAGAAAAACATGTGAAAGAGGCTATGGAAGAGCAGCCAACCTTGATGAATGCCTTTGAGTTGATTTCACTAAATAAGGG
TCTGAATCTAGACAATTTTTTTGAGTCTGATAAGAAGTACAAGAGAGAGACAAGATTTACATCGCAGTGCCCTCCGAAAG
AAATCATCAATAGGATCGAAGAAGCTGCTAACTTACTAGGATTTAATATTCAGAAGAGAAACTACAGGATGAGAATGGAG
AATATAAAGGAAGGAAGAAAAGGACATCTAAACATTGCAACTGAGGTTTTCCAAGTGGCACCATCCTTACATGTGGTTGA
GCTCAAAAAGGCCAAGGGAGATACCCTGGAGTTTCAAAAGTTCTACCAAACGCTCTCGACGCAACTAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis