Browse Element(s) Details


OsAffx.16783.1.S1_x_at

Description tigr:9632.m02899
TID=OsAffx.16783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL133421 N-hydroxycinnamoylbenzoyltransferase-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3057011/11HCBT-like putative defense response protein, putative
LOC_Os08g019803/11HCBT-like putative defense response protein, putative, expressed
LOC_Os08g020202/11HCBT-like putative defense response protein, putative
LOC_Os08g019502/11HCBT-like putative defense response protein, putative, expressed
LOC_Os08g020302/11HCBT-like putative defense response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein
LOC_Os04g30530NANA4+18060058..18063002NB-ARC domain containing protein, expressed
LOC_Os04g30540OsAffx.14050.1.S1_at11/114+18063778..18064869Leucine Rich Repeat family protein
LOC_Os04g30550OsAffx.3955.1.S1_at11/114+18067132..18067888GDP-mannose 4,6 dehydratase 1, putative
LOC_Os04g30560OsAffx.26256.1.S1_at11/114+18068110..18068565hypothetical protein
LOC_Os04g30570OsAffx.16783.1.S1_x_at11/114+18070685..18072098HCBT-like putative defense response protein, putative
LOC_Os04g30580NANA4+18073642..18076973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.14491.2.S1_x_at4/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30590Os.47463.1.S1_x_at3/114+18079526..18083223transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30600OsAffx.3956.1.S1_at11/114+18086346..18086837HCBT-like putative defense response protein, putative
LOC_Os04g30610OsAffx.26258.3.S1_at11/114+18091907..18094112NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16783.1.S1_x_at--596--7732Chr08:627076..627100 (25 bp)
GGTGGAGGAGTGCTTCCTCCATTTC
LOC_Os08g01980
OsAffx.16783.1.S1_x_at--1130--10652Chr08:627064..627087 (24 bp)
TTCCTCCATTTCTCGGCGGAGAGCT
LOC_Os08g01980
OsAffx.16783.1.S1_x_at--133--6011Chr04:18071230..18071330 (25 bp)
GAGAGCTCGGTGGTCGCGCACATCT
LOC_Os04g30570
OsAffx.16783.1.S1_x_at--377--7231Chr04:18071218..18071242 (25 bp)
GTCGCGCACATCTGGCGAGCCGTGT
LOC_Os04g30570
OsAffx.16783.1.S1_x_at--249--8551Chr04:18071166..18071190 (25 bp)
TGGAGACGAGGCACGGCCTCTCCGT
LOC_Os04g30570
OsAffx.16783.1.S1_x_at--456--1931Chr04:18071154..18071178 (25 bp)
ACGGCCTCTCCGTGGGACTGCGAGC
LOC_Os04g30570
OsAffx.16783.1.S1_x_at--24--3991Chr04:18071128..18071152 (25 bp)
CGGGTCAAGGAGGTGCCACAAGAAT
LOC_Os04g30570
OsAffx.16783.1.S1_x_at--898--2211Chr04:18071111..18071135 (25 bp)
ACAAGAATACATGGGCAACACGGTG
LOC_Os04g30570
OsAffx.16783.1.S1_x_at--727--7894Chr08:649812..649836 (25 bp)
GGTTCGACGTGTTCGGCAACGACTT
LOC_Os08g02030
OsAffx.16783.1.S1_x_at--153--1894Chr08:649806..649830 (25 bp)
ACGTGTTCGGCAACGACTTCGGGTG
LOC_Os08g02030
OsAffx.16783.1.S1_x_at--736--6512Chr08:626494..626518 (25 bp)
GATTTGCCTGGCACCGGAGGCGCTC
LOC_Os08g01980
Target Sequence 
GGTGGAGGAGTGCTTCCTCCATTTCTCGGCGGAGAGCTCGGTGGTCGCGCACATCTGGCGAGCCGTGTGCCGAGCCCGCC
GCCTCGCGCCGGAGCTGGAGACGAGGCACGGCCTCTCCGTGGGACTGCGAGCGCGGGTCAAGGAGGTGCCACAAGAATAC
ATGGGCAACACGGTGGTGGGCGCCGTCGCGAGGGCCACCGCCGGCGAGCTCCTCGAGAGAGGGCTCGGCTGGGCGGCGTG
GCTGCTGAACCGCGCCGTGGCGTCCGCGGGCGACGAGGCGAGCGTGAGGCGCACGCTGCCGGCGTGGCCGGAGACGCCGA
GGTTCGTGACGGTGGCGAGCCTGCAGAACGCCGGCGTGGTGGTGATCTCGGGCTCGCCGCGGTTCGACGTGTTCGGCAAC
GACTTCGGGTGGGGGAGGCCGGTGGGCGTCCGGAGCGGCGCCGGGAATAAGATGGACGGGAAGATTACGGTGTACGAGAG
GCGAGGCGGCGGCGGCGGCATGGCGGTGGAGATTTGCCTGGCACCGGAGGCGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16783.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis