Browse Element(s) Details


OsAffx.16813.1.S1_x_at

Description tigr:9636.m00286
TID=OsAffx.16813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome P450 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0368211/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03650Os.10429.1.S1_at11/118+1717285..1723595transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03670Os.12605.1.S1_s_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03670OsAffx.16812.2.S1_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03676Os.52441.1.S1_at11/118+1743506..1746109glycerine-rich protein, putative, expressed
LOC_Os08g03682Os.49633.1.S1_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03682OsAffx.16813.1.S1_x_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03690Os.16607.1.S1_at10/118+1749632..1750761Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g03700OsAffx.29017.1.S1_x_at11/118+1751367..1752854Acyltransferase family protein
LOC_Os08g03710OsAffx.9194.2.S1_at11/118+1753458..1754055hypothetical protein
LOC_Os08g03710OsAffx.2609.2.S1_x_at1/118+1753458..1754055hypothetical protein
LOC_Os08g03720NANA8+1758813..1764478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03730NANA8+1767059..1769600transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.47463.1.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03740Os.14491.2.S1_x_at5/118+1769787..1770795transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16813.1.S1_x_at--640--9412Chr08:1748504..1748528 (25 bp)
TCGTCCGCGAGTCCTTCCGGATGCA
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--316--7251Chr08:1748559..1748583 (25 bp)
GTCCCTGAAGCCGACGACGATCATG
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--389--5791Chr08:1748571..1748595 (25 bp)
GACGACGATCATGGGCTACGACATC
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--1135--791Chr08:1748581..1748605 (25 bp)
ATGGGCTACGACATCCCGGCGCGGA
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--198--3932Chr08:1748597..1748621 (25 bp)
CGGCGCGGACGAGGATCTTCATCAA
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--631--8111Chr08:1748603..1748627 (25 bp)
GGACGAGGATCTTCATCAACACCCA
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--354--8171Chr08:1748639..1748663 (25 bp)
GGAACACCCGCATCTGGGACGACGT
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--1080--8531Chr08:1748717..1748741 (25 bp)
TGGAGATCAGCCACCTGCCGGACTT
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--913--9451Chr08:1748792..1748816 (25 bp)
TCGGCGTCATCCTGGTGCTCATGGC
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--594--4091Chr08:1748871..1748895 (25 bp)
CGACGACATCGACACCCAGGAGGTG
LOC_Os08g03682
OsAffx.16813.1.S1_x_at--1131--4171Chr08:1748885..1748909 (25 bp)
CCCAGGAGGTGTACGGCATGACCAT
LOC_Os08g03682
Target Sequence 
TCGTCCGCGAGTCCTTCCGGATGCACCCGGCGGGGCCATTCCTGATCCCCCACGAGTCCCTGAAGCCGACGACGATCATG
GGCTACGACATCCCGGCGCGGACGAGGATCTTCATCAACACCCACGCGCTCGGCCGGAACACCCGCATCTGGGACGACGT
CGACGCGTTCCGGCCGGAGAGGCACCTGCCGGCATCGGCGGACGGCGGCCGGGTGGAGATCAGCCACCTGCCGGACTTCA
AGATCCTCCCCTTCAGCGCCGGCAAGCGCAAGTGCCCCGGCGCGCCGCTCGGCGTCATCCTGGTGCTCATGGCGCTCGCC
AGGCTCTTCCACTGCTTCGACTGGTCGCCGCCGGACGGCCTCCGCCCCGACGACATCGACACCCAGGAGGTGTACGGCAT
GACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16813.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis