Browse Element(s) Details


OsAffx.16873.1.S1_at

Description tigr:9636.m00674
TID=OsAffx.16873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ302293 MLA6 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0737011/11RGH1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07330OsAffx.5737.1.S1_x_at11/118+4099054..4103614NB-ARC domain containing protein, expressed
LOC_Os08g07340OsAffx.5737.3.S1_at11/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07340OsAffx.5737.1.S1_x_at1/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07350Os.26886.2.S1_s_at3/118+4111657..4112034hypothetical protein
LOC_Os08g07350Os.26886.6.S1_s_at2/118+4111657..4112034hypothetical protein
LOC_Os08g07360Os.26886.3.S1_x_at6/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07360Os.26886.1.S1_x_at5/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07370OsAffx.16873.1.S1_at11/118+4120724..4122411RGH1A, putative
LOC_Os08g07380Os.49373.1.S1_at1/118+4126151..4137217retrotransposon protein, putative, unclassified, expressed
LOC_Os08g07390OsAffx.16875.1.S1_x_at11/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07390Os.8936.1.S1_at10/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07400Os.22305.1.S1_at11/118+4147023..4150907Cullin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16873.1.S1_at--440--6091Chr08:4122327..4122351 (25 bp)
GAGTACGACCTGCACACGGGCATAA
LOC_Os08g07370
OsAffx.16873.1.S1_at--108--2751Chr08:4122300..4122324 (25 bp)
AAGAAGATCCAGTCTCTCTCACGTG
LOC_Os08g07370
OsAffx.16873.1.S1_at--733--6991Chr08:4122177..4122196 (20 bp)
GTACGACATGGACCTTCCTTTGGCT
LOC_Os08g07370
OsAffx.16873.1.S1_at--309--5111Chr08:4122117..4122141 (25 bp)
GCACATGCTCCGACGGCTTAGGAAG
LOC_Os08g07370
OsAffx.16873.1.S1_at--373--8271Chr08:4121880..4122019 (25 bp)
GGCGTAGCAGGTTTTTTACTGTCCT
LOC_Os08g07370
OsAffx.16873.1.S1_at--146--3897Chr09:17318808..17318832 (25 bp)
CTGTCCTTGAGGTTGTGCAGTACCA
NONE
OsAffx.16873.1.S1_at--664--7332Chr09:17318822..17318989 (25 bp)
GTGCAGTACCAAATCCTGATCGTTG
NONE
OsAffx.16873.1.S1_at--1133--6412Chr09:6110377..6110771 (25 bp)
GATCTAGCATCATCCAACGGTCAGA
NONE
OsAffx.16873.1.S1_at--1122--1751Chr08:4121774..4121798 (25 bp)
ACCTCCTCTTTCAAGCAGTATCATT
LOC_Os08g07370
OsAffx.16873.1.S1_at--615--5671Chr08:4120805..4120829 (25 bp)
GACATCTGCATTTTTGGATTCCCTA
LOC_Os08g07370
OsAffx.16873.1.S1_at--562--7931Chr08:4120790..4120814 (25 bp)
GGATTCCCTATGCAATCTTCACAAG
LOC_Os08g07370
Target Sequence 
GAGTACGACCTGCACACGGGCATAAGGAAGAAGATCCAGTCTCTCTCACGTGAGCTCGAGGATGTGCACGCCGTCCTCCG
CATGGTCGGCGAGGTGCCACCGGAGCAGCTCGACGGGACTGTCGAGCTGTGGGCGCACGACCTCAGGGAGGCGTCGTACG
ACATGGACCTTCCTTTGGCTGTCCCGCACATGCTCCGACGGCTTAGGAAGAAGGTTAGGAAACTGTTCGAGCAGAGCAAC
GCTCGCCGCAAGATCGCCGGTGACATCCAGAAGATGAACAGGAGGCTCTTGGTGGAGGTGGCTGCAAGGCGTAGCAGGTT
TTTTACTGTCCTTGAGGTTGTGCAGTACCAAATCCTGATCGTTGATCTAGCATCATCCAACGGTCAGAAATCGTCCGTAC
CTCATGGTACTGCACCTCCTCTTTCAAGCAGTATCATTGGTGGAAAGGATGAGACATCTGCATTTTTGGATTCCCTATGC
AATCTTCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis