Browse Element(s) Details


OsAffx.16997.1.S1_at

Description tigr:9636.m01461
TID=OsAffx.16997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helicase conserved C-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1461010/11Helicase conserved C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14570Os.27682.1.S1_at10/118+8753744..8758865NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os08g14580Os.6287.1.S1_at10/118+8761383..8765231HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g14590OsAffx.5816.1.S1_at11/118+8767983..8768448hypothetical protein
LOC_Os08g14600OsAffx.5817.1.S1_at11/118+8775521..8776513expressed protein
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14620Os.19942.1.S1_at11/118+8789340..8791488expressed protein
LOC_Os08g14630NANA8+8794611..8795461hypothetical protein
LOC_Os08g14640Os.22829.1.S1_at11/118+8796477..8800537expressed protein
LOC_Os08g14650OsAffx.29199.1.S1_at10/118+8802883..8804027hypothetical protein
LOC_Os08g14650OsAffx.24469.1.S1_x_at1/118+8802883..8804027hypothetical protein
LOC_Os08g14660Os.53445.1.S1_at11/118+8806492..8810357SET domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16997.1.S1_at--860--10391Chr08:8781199..8781223 (25 bp)
TTTTGCTCTGCTATACTACTTTGGG
LOC_Os08g14610
OsAffx.16997.1.S1_at--465--5551Chr08:8781167..8781191 (25 bp)
GAAAGGTGGTGCATACGCTTAAGAA
LOC_Os08g14610
OsAffx.16997.1.S1_at--1031--5191NONE
GAATTGGCTGCAACAAGTTTCTGTT
NONE
OsAffx.16997.1.S1_at--745--5531Chr08:8778738..8779152 (25 bp)
GAAACAATAATTTTGGCCAGTGGCA
LOC_Os08g14610
OsAffx.16997.1.S1_at--1008--8911Chr08:8778679..8778703 (25 bp)
TGACCAGGACTTTCATTTCAGTGAT
LOC_Os08g14610
OsAffx.16997.1.S1_at--726--1111Chr08:8778660..8778684 (25 bp)
AGTGATAGCACTATGGCCATCCCTA
LOC_Os08g14610
OsAffx.16997.1.S1_at--670--7851Chr08:8778613..8778637 (25 bp)
GGTAGATCCAGCAGCAGATTGTCTT
LOC_Os08g14610
OsAffx.16997.1.S1_at--436--5951Chr08:8778472..8778577 (25 bp)
GAGCACACAGCTCGACACATCGGAA
LOC_Os08g14610
OsAffx.16997.1.S1_at--718--2811Chr08:8778395..8778419 (25 bp)
AAGATTTGGGTCGTGTATGCCATGA
LOC_Os08g14610
OsAffx.16997.1.S1_at--355--1411Chr08:8778162..8778186 (25 bp)
AGACATTCCACTGCAAGGCCCTTAG
LOC_Os08g14610
OsAffx.16997.1.S1_at--43--1311Chr08:8778128..8778152 (25 bp)
AGAGGGAATTCCAGCAGTGGCAAGT
LOC_Os08g14610
Target Sequence 
TTTTGCTCTGCTATACTACTTTGGGAAGGGAAGAAAGGTGGTGCATACGCTTAAGAATTGGCTGCAACAAGTTTCTGTTG
AAAACAAGATTTGTGGATGGGGATACAACACTACAGAAGTTCTAGGAAGAATTTGCAATTGTTCCGTGGAGAAAGCAGAA
GAAAGAGAAACAATAATTTTGGCCAGTGGCAACATGGAGAAGATGGAAGAAAAACATCAGAAATCTGACCAGGACTTTCA
TTTCAGTGATAGCACTATGGCCATCCCTAGGGAGAGAAAACAAAAAGGAGAGGTAGATCCAGCAGCAGATTGTCTTAAGG
ATCGTTGGGGTGCTTTCTATGTGGCTGTGGAGAGCACACAGCTCGACACATCGGAAGTGAATAATAAAAAACAGTTGAAC
AATTACAACCACGATATTCATGTTTATGAAGATTTGGGTCGTGTATGCCATGAATGTGGTTCAGGGGAAATATTTATGCT
TATCAGTTTCATTCAAGGCTTCATGACAAGACATTCCACTGCAAGGCCCTTAGGGACATGGAAGAGGGAATTCCAGCAGT
GGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis