Browse Element(s) Details


OsAffx.17001.1.S1_at

Description tigr:9636.m01480
TID=OsAffx.17001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1479011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14744OsAffx.8647.1.S1_at3/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14744OsAffx.15648.1.S1_at1/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14760Os.52921.1.S1_at11/118+8867836..88725064-coumarate-CoA ligase 1, putative, expressed
LOC_Os08g14770Os.9720.1.S1_at11/118+8873567..8881798aminotransferase class III family protein, putative, expressed
LOC_Os08g14780OsAffx.29202.1.S1_at11/118+8882972..8884610hypothetical protein
LOC_Os08g14780Os.50047.1.S1_at1/118+8882972..8884610hypothetical protein
LOC_Os08g14790OsAffx.17001.1.S1_at11/118+8889031..8889450hypothetical protein
LOC_Os08g14800OsAffx.29203.5.S1_at11/118+8893643..8895728hypothetical protein
LOC_Os08g14810Os.27450.1.S1_at10/118+8897977..8902457NB-ARC domain containing protein, expressed
LOC_Os08g14820OsAffx.29204.1.S1_at10/118+8912271..8913306hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17001.1.S1_at--1160--2211Chr08:8889077..8889101 (25 bp)
ACAAGAGAGCGGACTATGCCCGGCT
LOC_Os08g14790
OsAffx.17001.1.S1_at--948--2031Chr08:8889089..8889113 (25 bp)
ACTATGCCCGGCTCGCGGTGGCACT
LOC_Os08g14790
OsAffx.17001.1.S1_at--143--8511Chr08:8889107..8889131 (25 bp)
TGGCACTGCGGCAGGACCATGGCAT
LOC_Os08g14790
OsAffx.17001.1.S1_at--138--3491Chr08:8889118..8889142 (25 bp)
CAGGACCATGGCATGCCGGCCGTCG
LOC_Os08g14790
OsAffx.17001.1.S1_at--1138--5731Chr08:8889169..8889193 (25 bp)
GACTGGCTCCGCAAAGCCGTCGCGT
LOC_Os08g14790
OsAffx.17001.1.S1_at--542--6351Chr08:8889212..8889236 (25 bp)
GATGCGCAGGACATCCATCTCGGTC
LOC_Os08g14790
OsAffx.17001.1.S1_at--724--571Chr08:8889224..8889248 (25 bp)
ATCCATCTCGGTCTGAGGCAGCAGC
LOC_Os08g14790
OsAffx.17001.1.S1_at--836--6211Chr08:8889284..8889308 (25 bp)
GAGGCGACGAGCTTATCCATCTACT
LOC_Os08g14790
OsAffx.17001.1.S1_at--116--1551Chr08:8889293..8889317 (25 bp)
AGCTTATCCATCTACTTCCTCCTGG
LOC_Os08g14790
OsAffx.17001.1.S1_at--30--1391Chr08:8889351..8889375 (25 bp)
AGACGCCACGGTGGGCACACTGTTG
LOC_Os08g14790
OsAffx.17001.1.S1_at--953--8231Chr08:8889364..8889388 (25 bp)
GGCACACTGTTGATGCGAAAACACG
LOC_Os08g14790
Target Sequence 
ACAAGAGAGCGGACTATGCCCGGCTCGCGGTGGCACTGCGGCAGGACCATGGCATGCCGGCCGTCGTTGTCGCTCGAGTG
TCGGCGTGCCCCGACTGGCTCCGCAAAGCCGTCGCGTGGGCATCGTGGGAGCATGGATGCGCAGGACATCCATCTCGGTC
TGAGGCAGCAGCGCCACCACCACCCTCTTCCTCGGTCCCCTCCGCCCGAGGCGACGAGCTTATCCATCTACTTCCTCCTG
GCGTTTGGGCGGCAGCAGCGGCAACACCCCGCGCAGACGCCACGGTGGGCACACTGTTGATGCGAAAACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis