Browse Element(s) Details


OsAffx.17026.1.S1_at

Description tigr:9636.m01664
TID=OsAffx.17026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T24D18.18 protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1657011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16510OsAffx.31869.1.S1_at8/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.5.S1_x_at5/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_s_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_x_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.2.S1_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.4.S1_x_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16520OsAffx.7527.1.S1_x_at1/118+10111005..10112326hypothetical protein
LOC_Os08g16530Os.1924.1.S1_at2/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16530OsAffx.10632.1.S1_at1/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16540NANA8+10117480..10120552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein
LOC_Os08g16570OsAffx.17026.1.S1_at11/118+10132247..10135382expressed protein
LOC_Os08g16570Os.48405.1.A1_at8/118+10132247..10135382expressed protein
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17026.1.S1_at--274--2971Chr08:10133307..10133331 (25 bp)
AATGGAATGTTGGACCCTTGGTTTG
LOC_Os08g16570
OsAffx.17026.1.S1_at--814--6611Chr08:10133315..10133339 (25 bp)
GTTGGACCCTTGGTTTGAGAGCAAG
LOC_Os08g16570
OsAffx.17026.1.S1_at--909--7971Chr08:10133348..10133372 (25 bp)
GGATGCGAACCAGGTGTTGGCCTAC
LOC_Os08g16570
OsAffx.17026.1.S1_at--195--8811Chr08:10133362..10133386 (25 bp)
TGTTGGCCTACTTTGCCGTGTCGAA
LOC_Os08g16570
OsAffx.17026.1.S1_at--865--10271Chr08:10133373..10133397 (25 bp)
TTTGCCGTGTCGAAGCTTGGTGAGC
LOC_Os08g16570
OsAffx.17026.1.S1_at--557--5391Chr08:10133384..10133408 (25 bp)
GAAGCTTGGTGAGCCACCAGTGGAT
LOC_Os08g16570
OsAffx.17026.1.S1_at--265--1731Chr08:10133399..10133423 (25 bp)
ACCAGTGGATGGGATTACTGACACT
LOC_Os08g16570
OsAffx.17026.1.S1_at--1052--3571Chr08:10133446..10133470 (25 bp)
CATTTGGAAACTGGGCTCCAGCCGT
LOC_Os08g16570
OsAffx.17026.1.S1_at--954--1671Chr08:10133465..10133489 (25 bp)
AGCCGTGGCTACTCGCCTGCAAAAT
LOC_Os08g16570
OsAffx.17026.1.S1_at--591--2431Chr08:10133485..10133509 (25 bp)
AAAATGGCGGGCTTACCTGCAAGGT
LOC_Os08g16570
OsAffx.17026.1.S1_at--71--7591Chr08:10133493..10133908 (25 bp)
GGGCTTACCTGCAAGGTACTTGAAA
LOC_Os08g16570
Target Sequence 
AATGGAATGTTGGACCCTTGGTTTGAGAGCAAGGGACTAGTGGATGCGAACCAGGTGTTGGCCTACTTTGCCGTGTCGAA
GCTTGGTGAGCCACCAGTGGATGGGATTACTGACACTAATCCCGAGGGGCTGACTGCTGCATTTGGAAACTGGGCTCCAG
CCGTGGCTACTCGCCTGCAAAATGGCGGGCTTACCTGCAAGGTACTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis