Browse Element(s) Details


OsAffx.17030.1.S1_at

Description tigr:9636.m01675
TID=OsAffx.17030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1667011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16630OsAffx.17028.1.S1_at10/118+10171942..10173452F-box domain containing protein
LOC_Os08g16640OsAffx.5843.1.S1_at11/118+10174556..10174951hypothetical protein
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16690OsAffx.5844.1.S1_at10/118+10201181..10202956hypothetical protein
LOC_Os08g16690Os.54043.1.S1_at1/118+10201181..10202956hypothetical protein
LOC_Os08g16700OsAffx.5845.1.S1_at11/118+10206743..10207506hypothetical protein
LOC_Os08g16710Os.54043.1.S1_at11/118+10211422..10214225F-box domain containing protein, expressed
LOC_Os08g16720Os.18628.1.S1_at11/118+10215452..10216473transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17030.1.S1_at--141--2491Chr08:10194608..10194632 (25 bp)
AACAGCTTCATGAGTTTCCACGAAA
LOC_Os08g16670
OsAffx.17030.1.S1_at--772--5391Chr08:10194558..10194582 (25 bp)
GAAGCTTTGGTTCAACATTCACGAG
LOC_Os08g16670
OsAffx.17030.1.S1_at--899--7551Chr08:10192902..10192926 (25 bp)
GGGAGGTACACGTGACCACAAATTT
LOC_Os08g16670
OsAffx.17030.1.S1_at--1134--151Chr08:10192881..10192905 (25 bp)
ATTTTGGCCAACAACCGAGCACTAT
LOC_Os08g16670
OsAffx.17030.1.S1_at--1140--5931Chr08:10192865..10192889 (25 bp)
GAGCACTATGTCACTATTTTCCTTA
LOC_Os08g16670
OsAffx.17030.1.S1_at--837--10291Chr08:10192848..10192872 (25 bp)
TTTCCTTACTGAGATGTGCTCCGTA
LOC_Os08g16670
OsAffx.17030.1.S1_at--579--7291Chr08:10192833..10192857 (25 bp)
GTGCTCCGTACATTGAAGACCTAAG
LOC_Os08g16670
OsAffx.17030.1.S1_at--787--5971Chr08:10192643..10192667 (25 bp)
GAGAACTCGTTTTCTAGCCTCAAAT
LOC_Os08g16670
OsAffx.17030.1.S1_at--652--7451Chr08:10192616..10192640 (25 bp)
GTGTCTCTGAGTGGTATCACGTACT
LOC_Os08g16670
OsAffx.17030.1.S1_at--1098--9891Chr08:10192595..10192619 (25 bp)
TACTCGTCAAATCAGCTGCGCTTTA
LOC_Os08g16670
OsAffx.17030.1.S1_at--1155--5231Chr08:10192547..10192571 (25 bp)
GAATCACTTCAATCCTTTGCTGTTA
LOC_Os08g16670
Target Sequence 
AACAGCTTCATGAGTTTCCACGAAATTTTCCGAGGGATTATTACTGTCAGGAAGCTTTGGTTCAACATTCACGAGTTTAA
CGAATATCCACTGGAGGGGATTTCGTGTAAATTTGATAATCTGAGGGAGGTACACGTGACCACAAATTTTGGCCAACAAC
CGAGCACTATGTCACTATTTTCCTTACTGAGATGTGCTCCGTACATTGAAGACCTAAGTATTGAGGCTGAAGATATTTCA
TTTTCGCATAGAGACGATCCTTATGAAATTGAAGAAGATGACTTTATAAGTTCAGGGATAAACGAGAACTCGTTTTCTAG
CCTCAAATATGTGTCTCTGAGTGGTATCACGTACTCGTCAAATCAGCTGCGCTTTATGAAGTTTTTACTCTCCAAAACAG
AATCACTTCAATCCTTTGCTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis