Browse Element(s) Details


OsAffx.17147.1.S1_at

Description tigr:9636.m02494
TID=OsAffx.17147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2542011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25390Os.18966.1.S1_a_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25390Os.18966.2.S1_at11/118+15306511..15317764Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g25410OsAffx.29345.1.S1_at11/118+15323722..15328493hypothetical protein
LOC_Os08g25420OsAffx.17147.1.S1_at11/118+15341092..15341714expressed protein
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17147.1.S1_at--602--4151Chr08:15341641..15341665 (25 bp)
CCCAACCGGCAGGTGCTAGAGTCAA
LOC_Os08g25420
OsAffx.17147.1.S1_at--253--3951Chr08:15341635..15341659 (25 bp)
CGGCAGGTGCTAGAGTCAAGACGAT
LOC_Os08g25420
OsAffx.17147.1.S1_at--1084--6291Chr08:15341613..15341637 (25 bp)
GATGATGACGGATCGCAATTCGCAA
LOC_Os08g25420
OsAffx.17147.1.S1_at--1107--8931Chr08:15341608..15341632 (25 bp)
TGACGGATCGCAATTCGCAACCACA
LOC_Os08g25420
OsAffx.17147.1.S1_at--1031--3131Chr08:15341597..15341621 (25 bp)
AATTCGCAACCACACACAGTTGGCT
LOC_Os08g25420
OsAffx.17147.1.S1_at--724--2191Chr08:15341586..15341610 (25 bp)
ACACACAGTTGGCTGCGTCTGCGTC
LOC_Os08g25420
OsAffx.17147.1.S1_at--680--2651Chr08:15341543..15341567 (25 bp)
AAGCCAGAACTTGCGGTGAGGCAGA
LOC_Os08g25420
OsAffx.17147.1.S1_at--1129--1311Chr08:15341521..15341545 (25 bp)
AGAGGCTAGGGCATGGCAGACTGCA
LOC_Os08g25420
OsAffx.17147.1.S1_at--157--5871Chr08:15341475..15341499 (25 bp)
GAGCGCCCGGACTGGCCAGCTAGCT
LOC_Os08g25420
OsAffx.17147.1.S1_at--497--6171Chr08:15341448..15341472 (25 bp)
GAGGATCCGAAGGAACCACTGTTGG
LOC_Os08g25420
OsAffx.17147.1.S1_at--655--1711Chr08:15341267..15341458 (25 bp)
ACCACTGTTGGGAGGAGTTGAGTCT
LOC_Os08g25420
Target Sequence 
CCCAACCGGCAGGTGCTAGAGTCAAGACGATGATGACGGATCGCAATTCGCAACCACACACAGTTGGCTGCGTCTGCGTC
TGCGTCGGCGTCGGCGGCAAGCCAGAACTTGCGGTGAGGCAGAGGCTAGGGCATGGCAGACTGCAGGAAGGCATCATCGA
GGGGGAGAGCGCCCGGACTGGCCAGCTAGCTAGGAGGATCCGAAGGAACCACTGTTGGGAGGAGTTGAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis