Browse Element(s) Details


OsAffx.17149.1.S1_at

Description tigr:9636.m02499
TID=OsAffx.17149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2547011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25430Os.17809.1.S1_at11/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25430Os.57449.1.S1_x_at1/118+15343713..15350226Protein kinase domain containing protein, expressed
LOC_Os08g25440OsAffx.17148.1.S1_at11/118+15351518..15353290hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25450OsAffx.5924.1.S1_x_at11/118+15358139..15358699hypothetical protein
LOC_Os08g25460Os.11904.1.S1_at11/118+15361445..15368999transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os08g25470OsAffx.17149.1.S1_at11/118+15369335..15370678hypothetical protein
LOC_Os08g25480OsAffx.29346.1.S1_at11/118+15373015..15373850hypothetical protein
LOC_Os08g25490OsAffx.17150.1.S1_at11/118+15377583..15379272Reticuline oxidase precursor, putative
LOC_Os08g25500NANA8+15384078..15384590transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g25510NANA8+15389138..15391059retrotransposon protein, putative, unclassified
LOC_Os08g25520NANA8+15393091..15395846retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17149.1.S1_at--754--4251Chr08:15369375..15369399 (25 bp)
CCGTGGCAGCGGTGATCGTCGTCCC
LOC_Os08g25470
OsAffx.17149.1.S1_at--863--4611Chr08:15369428..15369452 (25 bp)
GCGAGACTGGACACGTACCTGGTGC
LOC_Os08g25470
OsAffx.17149.1.S1_at--468--5731Chr08:15369432..15369456 (25 bp)
GACTGGACACGTACCTGGTGCGGAT
LOC_Os08g25470
OsAffx.17149.1.S1_at--558--1231Chr08:15369483..15369507 (25 bp)
AGTTCGACTGCGACGAGTGGCCCGA
LOC_Os08g25470
OsAffx.17149.1.S1_at--455--6131Chr08:15369497..15369521 (25 bp)
GAGTGGCCCGACGATTTTGAGCTGA
LOC_Os08g25470
OsAffx.17149.1.S1_at--559--851Chr08:15369528..15369552 (25 bp)
ATGGCGGCGACATGAACGTCACCTA
LOC_Os08g25470
OsAffx.17149.1.S1_at--950--7611Chr08:15370346..15370370 (25 bp)
GGGAACTACATGAGCAGCGTGATAA
LOC_Os08g25470
OsAffx.17149.1.S1_at--1053--8891Chr08:15370356..15370380 (25 bp)
TGAGCAGCGTGATAATCTGGGACGA
LOC_Os08g25470
OsAffx.17149.1.S1_at--802--9551Chr08:15370368..15370392 (25 bp)
TAATCTGGGACGAGGAGAAATGGCC
LOC_Os08g25470
OsAffx.17149.1.S1_at--547--5831Chr08:15370526..15370550 (25 bp)
GACCTGGCCGTGAAGGACTGCAGCA
LOC_Os08g25470
OsAffx.17149.1.S1_at--266--2931Chr08:15370538..15370562 (25 bp)
AAGGACTGCAGCACGCACTGGTACG
LOC_Os08g25470
Target Sequence 
CCGTGGCAGCGGTGATCGTCGTCCCGGTGCCCGTGGCGGCAGCGGCGGCGCCGGCGAGACTGGACACGTACCTGGTGCGG
ATGGTGAACCGGATGGAGAGGAAGATGGAGTTCGACTGCGACGAGTGGCCCGACGATTTTGAGCTGAGGGCGAATGGCGG
CGACATGAACGTCACCTACGAGACCGCCGACCGCCCCGGCTACGACTACCTCACCCCCAGGGTCTCCTGCATATGGTCAT
ACGAGGGGAACTACATGAGCAGCGTGATAATCTGGGACGAGGAGAAATGGCCGGAGAAGAAGGCGTGCCTGGTGGGGGGC
GGCAGGAGATGCGAGCTGGTGTTCGAGAACAAGGAGGAGGTGCTGGTGGTGACGACGTCTTCGCCGGCGGCGCCGGGGAC
GGGGTCGTCGAGGAGGGTGCTGGGCGACCTGGCCGTGAAGGACTGCAGCACGCACTGGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis