Browse Element(s) Details


OsAffx.17182.1.S1_at

Description tigr:9636.m02687
TID=OsAffx.17182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2719011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27150Os.49450.1.S1_at11/118+16449783..16453531CRS1, putative, expressed
LOC_Os08g27160OsAffx.17181.1.S1_at11/118+16454313..16454907hypothetical protein
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27190OsAffx.17182.1.S1_at11/118+16478119..16478981F-box domain containing protein
LOC_Os08g27200OsAffx.17183.1.S1_at6/118+16483581..16484332hypothetical protein
LOC_Os08g27210OsAffx.17184.1.S1_at11/118+16486485..16487024hypothetical protein
LOC_Os08g27210Os.43876.2.S1_x_at1/118+16486485..16487024hypothetical protein
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein
LOC_Os08g27230NANA8+16488851..16489342hypothetical protein
LOC_Os08g27240Os.47452.1.A1_at7/118+16494729..16500531expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17182.1.S1_at--738--9331Chr08:16478239..16478263 (25 bp)
TCGCGCTGCGTCTGCACGGACTGGC
LOC_Os08g27190
OsAffx.17182.1.S1_at--988--4431Chr08:16478475..16478499 (25 bp)
TCCTTGTGGTAAACCCGGCCACTCG
LOC_Os08g27190
OsAffx.17182.1.S1_at--38--3651Chr08:16478533..16478557 (25 bp)
CTTCGCCAAGCTGGAATCTGGGTTC
LOC_Os08g27190
OsAffx.17182.1.S1_at--352--4711Chr08:16478542..16478566 (25 bp)
GCTGGAATCTGGGTTCTTTGACAAA
LOC_Os08g27190
OsAffx.17182.1.S1_at--766--491Chr08:16478573..16478597 (25 bp)
ATCGTCTTCGACACTACCTTATCGC
LOC_Os08g27190
OsAffx.17182.1.S1_at--959--511Chr08:16478593..16478617 (25 bp)
ATCGCCGCACTATGAGGTTTTTAAC
LOC_Os08g27190
OsAffx.17182.1.S1_at--756--2471Chr08:16478615..16478639 (25 bp)
AACATCCAATTTGTTGACGTCGGAT
LOC_Os08g27190
OsAffx.17182.1.S1_at--1021--6651Chr08:16478627..16478651 (25 bp)
GTTGACGTCGGATGGTACAACGTAA
LOC_Os08g27190
OsAffx.17182.1.S1_at--824--2411Chr08:16478650..16478674 (25 bp)
AAAAACGATGGATCCCGTCTTGAAG
LOC_Os08g27190
OsAffx.17182.1.S1_at--220--7971Chr08:16478659..16478683 (25 bp)
GGATCCCGTCTTGAAGAAATCAGAA
LOC_Os08g27190
OsAffx.17182.1.S1_at--9--5451Chr08:16478775..16478799 (25 bp)
GAACCGTGGCTAGCGCTCAGAGGCT
LOC_Os08g27190
Target Sequence 
TCGCGCTGCGTCTGCACGGACTGGCGCTCCGCCATCGACTCCCGCCGGCTGCTACGCCCTCCCGCTGTCGCTCGCCGGCA
TTTTCATCCACTTCAACGCCCTCACGTTCCCGGAGTTCTTCTCTCGTCCATCTTCGTCACCGACAACCAACAAAGCCCCG
ACATCGGGGACCACTGCAACGGCCTCCTTTTGCTTTTCTCTCTCCTTGTGGTAAACCCGGCCACTCGAAGGTGGGCGCGC
TTGCCACCATTGCCCCGCACCTTCGCCAAGCTGGAATCTGGGTTCTTTGACAAAGAATTCATCGTCTTCGACACTACCTT
ATCGCCGCACTATGAGGTTTTTAACATCCAATTTGTTGACGTCGGATGGTACAACGTAAAAACGATGGATCCCGTCTTGA
AGAAATCAGAATGGCCACCATCGCCGCTCGTCCTCCATGTCTTCTCATCGGCGACAGGGCGATGGGAGGAGAGATCATTC
TCTAGAGAAGGGGATGCAGCCGGAACCGTGGCTAGCGCTCAGAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis