Browse Element(s) Details


OsAffx.17276.1.S1_at

Description tigr:9636.m03169
TID=OsAffx.17276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3172011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31670OsAffx.6000.1.S1_at11/118+19499933..19502410transporter, putative
LOC_Os08g31680Os.24718.1.S1_at1/118+19503134..19508739retrotransposon protein, putative, unclassified
LOC_Os08g31690OsAffx.17274.1.S1_at11/118+19511367..19512629F-box domain containing protein, expressed
LOC_Os08g31700OsAffx.17275.1.S1_x_at10/118+19513610..19515281expressed protein
LOC_Os08g31700OsAffx.17275.1.S1_at10/118+19513610..19515281expressed protein
LOC_Os08g31710Os.11090.1.S1_at11/118+19515662..19517229transporter, putative, expressed
LOC_Os08g31720OsAffx.17276.1.S1_at11/118+19522513..19523186Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g31730OsAffx.29486.2.S1_x_at1/118+19529677..19530255hypothetical protein
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein
LOC_Os08g31750Os.49705.1.S1_at11/118+19539916..19543786methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17276.1.S1_at--1065--5851Chr08:19522548..19522572 (25 bp)
GAGCGACGCGGCTGACGGAACTGCC
LOC_Os08g31720
OsAffx.17276.1.S1_at--357--1791Chr08:19522609..19522633 (25 bp)
ACCGTCTGCGCCGTTGTCGTGGTTG
LOC_Os08g31720
OsAffx.17276.1.S1_at--399--8471Chr08:19522643..19522667 (25 bp)
TGGCCCCGCTCGTGTACTGGCTGTA
LOC_Os08g31720
OsAffx.17276.1.S1_at--49--9431Chr08:19522652..19522676 (25 bp)
TCGTGTACTGGCTGTATCGGAGGAA
LOC_Os08g31720
OsAffx.17276.1.S1_at--65--3951Chr08:19522760..19522784 (25 bp)
CGGTCGGAGGCCAAGGCGACTACAC
LOC_Os08g31720
OsAffx.17276.1.S1_at--5--3211Chr08:19522771..19522795 (25 bp)
CAAGGCGACTACACGCGGCGTCGTG
LOC_Os08g31720
OsAffx.17276.1.S1_at--196--3771Chr08:19522831..19522855 (25 bp)
CTCTGCTGCGGCATGTGCGGCTCCG
LOC_Os08g31720
OsAffx.17276.1.S1_at--1090--9291Chr08:19522852..19522876 (25 bp)
TCCGCCTACGACATCGTGCGAGGAG
LOC_Os08g31720
OsAffx.17276.1.S1_at--868--3311Chr08:19522981..19523005 (25 bp)
CACATCCAACTGTGCGGAGACGACG
LOC_Os08g31720
OsAffx.17276.1.S1_at--338--3851Chr08:19523115..19523139 (25 bp)
CTGACGGCGAGCGATTACAGCGGCT
LOC_Os08g31720
OsAffx.17276.1.S1_at--247--9871Chr08:19523130..19523154 (25 bp)
TACAGCGGCTGGGATGAACTCTCCA
LOC_Os08g31720
Target Sequence 
GAGCGACGCGGCTGACGGAACTGCCGGAGGAGCTCCGATCAGCGCCGGCGCCATCGCCGGCACCGTCTGCGCCGTTGTCG
TGGTTGTCGGGCTGCTGGCCCCGCTCGTGTACTGGCTGTATCGGAGGAAGCTGAAGGCGGCGGCGAGTCCTCCTCTGCGT
CCGCCGGCCGCCGCGGCGACGCCCCTCGTCCGCGCTCAGGAAGCAGGCGCGGCGGTCGGAGGCCAAGGCGACTACACGCG
GCGTCGTGCGCAAGTCGCCGTCCCCGCCAGGGATGGCGGCGACCTCTGCTGCGGCATGTGCGGCTCCGCCTACGACATCG
TGCGAGGAGGTGGGGAGCTGCCGGAGACGCTGGAGTGCGGCCACCACTTCCACCGGCGGTGCGTCCGGCGGTGGCTGCGC
GTCAACCTCGCCTGCCCGACGTGCAACGCCACGCACATCCAACTGTGCGGAGACGACGACGACGGTCAAGCGACCACGCC
CAGGCATCGGCTGACGGCGAGCGATTACAGCGGCTGGGATGAACTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis