Browse Element(s) Details


OsAffx.17282.1.S1_at

Description tigr:9636.m03184
TID=OsAffx.17282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cell division cycle protein 48 homolog (valosin containing protein homolog) (vcp). (soybean
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3187011/11Cell division cycle protein 48 homolog, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein
LOC_Os08g31840Os.15674.1.S1_at8/118+19606824..19611657TBC domain containing protein, expressed
LOC_Os08g31850Os.6288.1.S1_at11/118+19612719..19614221expressed protein
LOC_Os08g31860Os.30528.1.S1_at11/118+19614600..19615993expressed protein
LOC_Os08g31870OsAffx.17282.1.S1_at11/118+19624234..19627960Cell division cycle protein 48 homolog, putative
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein
LOC_Os08g31890NANA8+19633324..19634571hypothetical protein
LOC_Os08g31900OsAffx.17283.1.S1_at11/118+19637698..19639363hypothetical protein
LOC_Os08g31900OsAffx.26378.1.S1_at2/118+19637698..19639363hypothetical protein
LOC_Os08g31910Os.20810.4.S1_at3/118+19642384..19648692expressed protein
LOC_Os08g31910OsAffx.8676.1.S1_at1/118+19642384..19648692expressed protein
LOC_Os08g31910Os.20810.2.S1_x_at1/118+19642384..19648692expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016558biological_processprotein import into peroxisome matrix
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17282.1.S1_at--366--3791Chr08:19624771..19624795 (25 bp)
CTCGTCGCGGCTGGAGATCTTCAGG
LOC_Os08g31870
OsAffx.17282.1.S1_at--4--10511Chr08:19624752..19624776 (25 bp)
TTCAGGGCGAACCTCCGCAAGGCGC
LOC_Os08g31870
OsAffx.17282.1.S1_at--500--2091Chr08:19624664..19624688 (25 bp)
ACATCAAGGAGATCTGCCAGCGCGC
LOC_Os08g31870
OsAffx.17282.1.S1_at--920--1051Chr08:19624619..19624643 (25 bp)
AGGTGGTCCAGAAGAGCACCCTGGT
LOC_Os08g31870
OsAffx.17282.1.S1_at--52--1371Chr08:19624607..19624631 (25 bp)
AGAGCACCCTGGTCGGGAAGGCCCT
LOC_Os08g31870
OsAffx.17282.1.S1_at--529--4191Chr08:19624601..19624625 (25 bp)
CCCTGGTCGGGAAGGCCCTGGCAAT
LOC_Os08g31870
OsAffx.17282.1.S1_at--417--5911Chr08:19624566..19624590 (25 bp)
GAGCTCACCGTGGACCACTTCAAGA
LOC_Os08g31870
OsAffx.17282.1.S1_at--666--10511Chr08:19624548..19624572 (25 bp)
TTCAAGAGCGCCATGAAGCACGCAA
LOC_Os08g31870
OsAffx.17282.1.S1_at--486--5391Chr08:19624534..19624558 (25 bp)
GAAGCACGCAAGGAAGAGCGTCAGC
LOC_Os08g31870
OsAffx.17282.1.S1_at--38--9371Chr08:19624505..19624529 (25 bp)
TCGACGTCATCAAGTACGAGTACTT
LOC_Os08g31870
OsAffx.17282.1.S1_at--36--912Chr08:19624316..19624340 (25 bp)
AGGCGAAGGCGAAAGCAAAGCTGAA
LOC_Os08g31870
Target Sequence 
CTCGTCGCGGCTGGAGATCTTCAGGGCGAACCTCCGCAAGGCGCCCATGTCCCGCCACGTCGACCTGCCGGCCATGGCCG
CCTCCACCGACGGGTTCAGCGGCGCCGACATCAAGGAGATCTGCCAGCGCGCGTGCAAGCTCGCGGTGCGCGAGGTGGTC
CAGAAGAGCACCCTGGTCGGGAAGGCCCTGGCAATGGCGGGCGCGGAGCTCACCGTGGACCACTTCAAGAGCGCCATGAA
GCACGCAAGGAAGAGCGTCAGCGAGCTCGACGTCATCAAGTACGAGTACTTCAAGCACAAGTTCAGCGGCGGCATCCCCG
ACGAGGAGGAGGCGCCGGCGACGGAGCCGGAGCTGCCGGTGGGACAGCTGAGGTTGGTGGCGAAGCCGAAGACGAAGACG
AAGGCGGAGCTAGAAGCAGAGGCGGAGGCTGCGGCAAAAGCGAAGGCGGAGGCAGAGGCGAAGGCGAAAGCAAAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis