Browse Element(s) Details


OsAffx.17306.1.S1_x_at

Description tigr:9636.m03305
TID=OsAffx.17306.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3302011/11hypothetical protein
LOC_Os01g398602/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g350001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein
LOC_Os08g33030OsAffx.29482.3.S1_x_at11/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.29482.5.S1_x_at4/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_at1/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_x_at1/118+20357917..20360021hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009693biological_processethylene biosynthesis
GO:0009727biological_processdetection of ethylene stimulus
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17306.1.S1_x_at--857--3911Chr08:20350217..20350241 (25 bp)
CGGCCGTCGATAGGCGACACGGCGA
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--507--2091Chr08:20350160..20350184 (25 bp)
ACATGGGAGAAGAGGCTACATGGCA
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--700--9871Chr08:20350144..20350168 (25 bp)
TACATGGCAGCGGTGGACTCGGCGG
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--865--6131Chr08:20349856..20350130 (25 bp)
GAGGTGGACTCGCATCTCGAGAACA
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--944--1051Chr08:20349855..20350129 (25 bp)
AGGTGGACTCGCATCTCGAGAACAA
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--466--1811Chr08:20349750..20349774 (25 bp)
ACGCCCTAGCCGACCAGGTCGATTG
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--971--9951Chr08:20349744..20349768 (25 bp)
TAGCCGACCAGGTCGATTGGGACTG
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--683--13Chr01:22817039..22817058 (20 bp)
ATTGGGACTGGGAGGCCACCTACTT
LOC_Os01g39860
OsAffx.17306.1.S1_x_at--675--1072Chr01:22817117..22817140 (24 bp)
AGGGAGTCCCTGGACGCGTACATCA
LOC_Os01g39860
OsAffx.17306.1.S1_x_at--632--9631Chr08:20349582..20349606 (25 bp)
TCAGCACCAACCTAGGCCTCGGCGA
LOC_Os08g33020
OsAffx.17306.1.S1_x_at--933--9431Chr08:20349564..20349588 (25 bp)
TCGGCGACACCGACCGCGTCAGGGA
LOC_Os08g33020
Target Sequence 
CGGCCGTCGATAGGCGACACGGCGACGCGTGAGAAGGGGCGACGCGGCAGCGCGGCGACATGGGAGAAGAGGCTACATGG
CAGCGGTGGACTCGGCGGGCTCGGCGGCGCGGAGGTGGACTCGCATCTCGAGAACAAGTTCTACGCCTCCGACCTCGCCA
ACAACCTCCAGCTGGACAAGGACGACGACGACGACGTCCTCGTCGACGGCAGCGACAACGCCCTAGCCGACCAGGTCGAT
TGGGACTGGGAGGCCACCTACTTCGTCCAGCACCGCCACAAGAACAATGCCGCCGACTTCCCAGACATCCCACCCGCGGC
GAGGGAGTCCCTGGACGCGTACATCACGCAGGCGGTCTCCCTCGCCGAGTTGCTGGCCGGCTGCATCAGCACCAACCTAG
GCCTCGGCGACACCGACCGCGTCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17306.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis