Browse Element(s) Details


OsAffx.17314.2.S1_at

Description tigr:9636.m03366
TID=OsAffx.17314.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3358010/11hypothetical protein
LOC_Os12g221406/11glycerol 3-phosphate permease, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33540Os.32072.1.S1_at11/118+20812214..20815137ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed
LOC_Os08g33550OsAffx.24224.1.S1_at1/118+20816117..20818853transposon protein, putative, Mutator sub-class
LOC_Os08g33560Os.31312.2.S1_x_at5/118+20820315..20823658retrotransposon protein, putative, unclassified
LOC_Os08g33560Os.31312.5.S1_x_at4/118+20820315..20823658retrotransposon protein, putative, unclassified
LOC_Os08g33570OsAffx.22492.1.S1_x_at1/118+20824597..20830433retrotransposon protein, putative, unclassified
LOC_Os08g33570OsAffx.22492.1.S1_at1/118+20824597..20830433retrotransposon protein, putative, unclassified
LOC_Os08g33580OsAffx.17314.1.S1_s_at11/118+20832001..20834520hypothetical protein
LOC_Os08g33580OsAffx.17314.2.S1_at10/118+20832001..20834520hypothetical protein
LOC_Os08g33580OsAffx.17314.1.S1_at8/118+20832001..20834520hypothetical protein
LOC_Os08g33590Os.56209.1.S1_at11/118+20841435..20844412Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g33600NANA8+20849854..20851458retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g33610OsAffx.8551.1.S1_at1/118+20851733..20852789retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17314.2.S1_at--728--9733Chr12:12450598..12450617 (20 bp)
TCAATGGCTGCTCAACTTGGGAGCA
LOC_Os12g22140
OsAffx.17314.2.S1_at--504--4833Chr12:12450602..12450626 (25 bp)
GCTCAACTTGGGAGCATGCCAGGAA
LOC_Os12g22140
OsAffx.17314.2.S1_at--435--593Chr12:12450617..12450641 (25 bp)
ATGCCAGGAACCTTCTTCCAGTGTC
LOC_Os12g22140
OsAffx.17314.2.S1_at--234--953Chr12:12450622..12450646 (25 bp)
AGGAACCTTCTTCCAGTGTCTGGAC
LOC_Os12g22140
OsAffx.17314.2.S1_at--792--10553Chr12:12450629..12450653 (25 bp)
TTCTTCCAGTGTCTGGACCAGACCA
LOC_Os12g22140
OsAffx.17314.2.S1_at--201--2453Chr12:12450664..12450688 (25 bp)
AAAATTGGGAAGAATCCATGCCGAC
LOC_Os12g22140
OsAffx.17314.2.S1_at--741--571NONE
ATCCATGCCGACATAAGATTCAGAG
NONE
OsAffx.17314.2.S1_at--389--2811Chr08:20834407..20834431 (25 bp)
AAGATTCAGAGTGCTGACTGGTGGT
LOC_Os08g33580
OsAffx.17314.2.S1_at--133--3851Chr08:20834420..20834444 (25 bp)
CTGACTGGTGGTTGGGCTTAAAGAT
LOC_Os08g33580
OsAffx.17314.2.S1_at--217--7591Chr08:20834433..20834457 (25 bp)
GGGCTTAAAGATCTGTACTCCATAC
LOC_Os08g33580
OsAffx.17314.2.S1_at--556--9911Chr08:20834448..20834472 (25 bp)
TACTCCATACCCTTCAACTTATAGG
LOC_Os08g33580
Target Sequence 
TCAATGGCTGCTCAACTTGGGAGCATGCCAGGAACCTTCTTCCAGTGTCTGGACCAGACCAACAACAACACAAAATTGGG
AAGAATCCATGCCGACATAAGATTCAGAGTGCTGACTGGTGGTTGGGCTTAAAGATCTGTACTCCATACCCTTCAACTTA
TAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17314.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis