Browse Element(s) Details


OsAffx.17364.1.S1_at

Description tigr:9636.m03699
TID=OsAffx.17364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT004629 At3g50340
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3682011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein
LOC_Os08g36810OsAffx.6049.1.S1_at9/118+23124016..23125325hypothetical protein
LOC_Os08g36820OsAffx.17364.1.S1_at11/118+23127848..23129090expressed protein
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein
LOC_Os08g36840Os.26473.1.S1_at11/118+23140478..23148738Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
LOC_Os08g36850OsAffx.6050.1.S1_at11/118+23150251..23151866hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17364.1.S1_at--1045--6211Chr08:23128351..23128375 (25 bp)
GAGGCGACGCCGTACATGCGCCGCA
LOC_Os08g36820
OsAffx.17364.1.S1_at--1026--4891Chr08:23128315..23128339 (25 bp)
GCTTGCGGCGGGAAAGCCCCACGCT
LOC_Os08g36820
OsAffx.17364.1.S1_at--800--9371Chr08:23128177..23128201 (25 bp)
TCGAGGACCCCGCACTGGGTCGACA
LOC_Os08g36820
OsAffx.17364.1.S1_at--232--7711Chr08:23128161..23128185 (25 bp)
GGGTCGACACCTACCTGGACAGGCT
LOC_Os08g36820
OsAffx.17364.1.S1_at--827--5631Chr08:23128156..23128180 (25 bp)
GACACCTACCTGGACAGGCTCGGGT
LOC_Os08g36820
OsAffx.17364.1.S1_at--1070--2111Chr08:23128143..23128167 (25 bp)
ACAGGCTCGGGTCAGTCCTCAAGAG
LOC_Os08g36820
OsAffx.17364.1.S1_at--1129--9611Chr08:23128132..23128156 (25 bp)
TCAGTCCTCAAGAGCGGCGGGTGGA
LOC_Os08g36820
OsAffx.17364.1.S1_at--692--8931Chr08:23128077..23128101 (25 bp)
TGACGGCCTCCGGTCTGTTCGACGG
LOC_Os08g36820
OsAffx.17364.1.S1_at--1080--4511Chr08:23127957..23127981 (25 bp)
GCTCCGAGGACGTGTCCGACGCGCT
LOC_Os08g36820
OsAffx.17364.1.S1_at--528--9371Chr08:23127927..23127951 (25 bp)
TCGACCTCCGGCGATGCAAGGAGCG
LOC_Os08g36820
OsAffx.17364.1.S1_at--1136--4491Chr08:23127892..23127916 (25 bp)
GCCGTTCAGCTACCGCCGGAGATCG
LOC_Os08g36820
Target Sequence 
GAGGCGACGCCGTACATGCGCCGCAGCCTCGACGCGGCTTGCGGCGGGAAAGCCCCACGCTGGATCGAGTTCTGGAGCGA
CGCCGCGTCCGACCGGCGCCGCCGTGACTCGTCCTCCTCGGAGGCCTCGACCGCGTCGTCGTCATCCGGGTGCGCGTCGC
CGCCGGCGAGGAGATCGAGGACCCCGCACTGGGTCGACACCTACCTGGACAGGCTCGGGTCAGTCCTCAAGAGCGGCGGG
TGGAGGGACACGGAGGTGAATGAGATGGTCGAGGTGACGGCCTCCGGTCTGTTCGACGGCGAGGAGGCGCCGGCGGTGGA
CGCCGACGCGGTGCTCGACGCGCTCCTCCTGAAGGCCGACAGGTGCTCGGACTCGCTCCGCCGTGCCGGGTGGAGCTCCG
AGGACGTGTCCGACGCGCTGGGGCTCGACCTCCGGCGATGCAAGGAGCGGCCGCGGCCCGCCGTTCAGCTACCGCCGGAG
ATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis