Browse Element(s) Details


OsAffx.17389.1.S1_s_at

Description tigr:9636.m03813
TID=OsAffx.17389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expansin-related protein 2 precursor (ath-expgamma-1.1).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3793010/11Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37950Os.12449.1.A1_at11/118+23898429..23906472Copper-transporting ATPase PAA1, putative, expressed
LOC_Os08g37960Os.15015.1.S1_a_at11/118+23907313..23910459transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17389.1.S1_s_at--1046--6351NONE
GATCACCTACAACCCAACGGTATGT
NONE
OsAffx.17389.1.S1_s_at--330--10031Chr08:23888354..23888378 (25 bp)
TAGAGTTTCGGAGCTACTTCCTCCA
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--190--3571Chr08:23888187..23888211 (25 bp)
CATCACATTTGCCACGTCGAGGCAA
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--979--4351Chr08:23888176..23888200 (25 bp)
CCACGTCGAGGCAAGAACCCAAGAA
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--633--351Chr08:23888121..23888145 (25 bp)
ATAACGCAATAATGTTCCTGGAAGA
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--429--31Chr08:23888074..23888098 (25 bp)
ATGTTGGGTTCTGTTAACCCTAGCG
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--760--2611Chr08:23888059..23888083 (25 bp)
AACCCTAGCGGTTATGTCATCGTTA
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--420--8611Chr08:23888008..23888032 (25 bp)
TGGGTTCTGTTTATCCTAGCGGTTA
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--1010--4291Chr08:23887994..23888018 (25 bp)
CCTAGCGGTTATGTCATCGTTAAAT
LOC_Os08g37930
OsAffx.17389.1.S1_s_at--594--2992Chr07:2218923..2218966 (25 bp)
AATGTTCAGCATGCATGTATTGATG
NONE
OsAffx.17389.1.S1_s_at--408--4371Chr08:23887876..23887900 (25 bp)
CCAAAGGTTCTAAGGCTGTAAGGCT
LOC_Os08g37930
Target Sequence 
GATCACCTACAACCCAACGGTATGTCCGTAGAGTTTCGGAGCTACTTCCTCCATTTCACAATATAAGTCATTCTAGTATT
TTCCACATTAACATCAATGTATCTAGATTCATTAATATCAAAATAAATGTGGAAAATGCTAGAATAACTTACATTGTGAA
ATGGAGGGAGTAGACCATATAATTATTATTATGGTCATCACATTTGCCACGTCGAGGCAAGAACCCAAGAAGGATAGATA
TTTCAGATTTTCAGTAGTAATATAACGCAATAATGTTCCTGGAAGAAAAATATAAGAGGAATGTAATAATGTTGGGTTCT
GTTAACCCTAGCGGTTATGTCATCGTTAAATAAAAGAAAGGAATGTAATAATGTTGGGTTCTGTTTATCCTAGCGGTTAT
GTCATCGTTAAATAAAAGAAGTTCCCACAATGGTTTAGTGAATTAATGTTCAGCATGCATGTATTGATGTATTTTTATCT
GCTGGAATATATAATTAGTAGAAACACCAAAGGTTCTAAGGCTGTAAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17389.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis