Browse Element(s) Details


OsAffx.17465.1.S1_at

Description tigr:9636.m04263
TID=OsAffx.17465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4196010/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41940Os.56157.1.A1_at11/118+26368324..26373375teosinte glume architecture 1, putative, expressed
LOC_Os08g41940OsAffx.2442.1.S1_x_at1/118+26368324..26373375teosinte glume architecture 1, putative, expressed
LOC_Os08g41950Os.4153.1.S1_a_at11/118+26374337..26379418SRF-type transcription factor family protein, expressed
LOC_Os08g41960OsAffx.17465.1.S1_at10/118+26386299..26388857SRF-type transcription factor family protein, expressed
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0010076biological_processmaintenance of floral meristem identity
GO:0010093biological_processspecification of floral organ identity
GO:0048440biological_processcarpel development
GO:0048441biological_processpetal development
GO:0048442biological_processsepal development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17465.1.S1_at--43--9231NONE
TCCACCTCCAGCATTGATACAATTT
NONE
OsAffx.17465.1.S1_at--370--7191Chr08:26387630..26387654 (25 bp)
GTCGGTATTGGGACCTTCTGGACAC
LOC_Os08g41960
OsAffx.17465.1.S1_at--553--7611Chr08:26387681..26387705 (25 bp)
GGGAATCTCGGGTTGATTGCAATAT
LOC_Os08g41960
OsAffx.17465.1.S1_at--256--2191Chr08:26388211..26388235 (25 bp)
ACAAATCGTCCACGGAGGGCTAGCT
LOC_Os08g41960
OsAffx.17465.1.S1_at--462--1071Chr08:26388226..26388250 (25 bp)
AGGGCTAGCTCCTTTGTTGGTTGGA
LOC_Os08g41960
OsAffx.17465.1.S1_at--469--8031Chr08:26388248..26388272 (25 bp)
GGAGATGCAGCTCCTCCATTTAGGG
LOC_Os08g41960
OsAffx.17465.1.S1_at--504--9331Chr08:26388289..26388313 (25 bp)
TCGCCTAGCCCTTTGTATTTATGAC
LOC_Os08g41960
OsAffx.17465.1.S1_at--211--171Chr08:26388305..26388329 (25 bp)
ATTTATGACGACACTCCACCTAGGA
LOC_Os08g41960
OsAffx.17465.1.S1_at--525--8651Chr08:26388752..26388776 (25 bp)
TGGGCTGCATCTCATGATTGCCTTA
LOC_Os08g41960
OsAffx.17465.1.S1_at--525--4451Chr08:26388771..26388795 (25 bp)
GCCTTAGTGTGGTATTTTATGCGAC
LOC_Os08g41960
OsAffx.17465.1.S1_at--1162--591Chr08:26388789..26388813 (25 bp)
ATGCGACAAGGCTCGTTAGGCAACA
LOC_Os08g41960
Target Sequence 
TCCACCTCCAGCATTGATACAATTTTTGGTCGGTATTGGGACCTTCTGGACACAACAATTGATCTCAATATTGAAGCAAG
GGAATCTCGGGTTGATTGCAATATACAGGTCTGGATACGGAGACAAATCGTCCACGGAGGGCTAGCTCCTTTGTTGGTTG
GAGATGCAGCTCCTCCATTTAGGGGTGTTGGTGTGGCTCCTCGCCTAGCCCTTTGTATTTATGACGACACTCCACCTAGG
ATCAAGGTGGCAAAAGCTGGTGGCATGGAAGGTGGCATGATGGACGTCAATGATGGGTTGCAAGAGTTTGGGCTGCATCT
CATGATTGCCTTAGTGTGGTATTTTATGCGACAAGGCTCGTTAGGCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis