Browse Element(s) Details


OsAffx.17491.1.S1_at

Description tigr:9636.m04401
TID=OsAffx.17491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At5g52030MSG15_11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4323011/11TraB protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein
LOC_Os08g43190Os.10128.1.S1_at11/118+27183096..27185620oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os08g43200OsAffx.6121.1.S1_at11/118+27187835..27188545AP2 domain containing protein
LOC_Os08g43210OsAffx.29642.1.S1_at11/118+27191681..27192436AP2 domain containing protein
LOC_Os08g43220OsAffx.6122.1.S1_at11/118+27193776..27195847F-box domain containing protein
LOC_Os08g43230OsAffx.17491.1.S1_at11/118+27196599..27198435TraB protein, putative, expressed
LOC_Os08g43240Os.56055.1.S1_at9/118+27200027..27200786expressed protein
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17491.1.S1_at--423--2331Chr08:27197355..27197379 (25 bp)
AAAGATCTCTTCTGGTGCAAACCGG
LOC_Os08g43230
OsAffx.17491.1.S1_at--521--8971Chr08:27197370..27197394 (25 bp)
TGCAAACCGGCCCTTCGGAGAAGAG
LOC_Os08g43230
OsAffx.17491.1.S1_at--681--1051Chr08:27197509..27197533 (25 bp)
AGGTGTCTGAAGATCTTGGCGCTCA
LOC_Os08g43230
OsAffx.17491.1.S1_at--528--9471Chr08:27197675..27197698 (24 bp)
TCTTGAACGAGCTTGGAAATCCCTT
LOC_Os08g43230
OsAffx.17491.1.S1_at--726--3171Chr08:27197718..27197742 (25 bp)
AATTGGTAGTTTCATTGTTCCGTGG
LOC_Os08g43230
OsAffx.17491.1.S1_at--164--1031Chr08:27197931..27197955 (25 bp)
AGGTAGCCCCTACGAGTTGTATGAG
LOC_Os08g43230
OsAffx.17491.1.S1_at--244--5551Chr08:27197955..27197979 (25 bp)
GAAACTGAGCATCTCATATCCCTCA
LOC_Os08g43230
OsAffx.17491.1.S1_at--292--3331Chr08:27197978..27198002 (25 bp)
CACTACTGCAACCTCTGATACATGA
LOC_Os08g43230
OsAffx.17491.1.S1_at--666--2111Chr08:27198161..27198181 (21 bp)
ACATGTTCCTTGCATGGTCTCTGAA
LOC_Os08g43230
OsAffx.17491.1.S1_at--125--1551Chr08:27198308..27198332 (25 bp)
AGCATCATCTGATACCTGGGCAAGC
LOC_Os08g43230
OsAffx.17491.1.S1_at--523--3891Chr08:27198323..27198347 (25 bp)
CTGGGCAAGCTCACTCATCAAAGGG
LOC_Os08g43230
Target Sequence 
AAAGATCTCTTCTGGTGCAAACCGGCCCTTCGGAGAAGAGTTCCGAGCGGCTAGGAAGGTGTCTGAAGATCTTGGCGCTC
AGCTCGTTCTTGGGGATCGTCCAATTGAAATAACTCTTGAACGAGCTTGGAAATCCCTTAGCTGGGATGAGAAGACTAAA
TTGGTAGTTTCATTGTTCCGTGGAATTACCTCTACAACTGACACAAGTCAGGATGAGAAAGCTGCAGGTAGCCCCTACGA
GTTGTATGAGAAACTGAGCATCTCATATCCCTCACTACTGCAACCTCTGATACATGAGCGTGACATGTTCCTTGCATGGT
CTCTGAAGAGGAGCAAAGCTGTAAACAAGAGCAAAACTGTCGTTGGGATCATTGGAAAGGGACATATGAATGGTGTGGTG
TATGCACTGATTTCTGATCAAGGAGACTTGAGATTCCGTGATCTTGTTGGTAGAGCATCATCTGATACCTGGGCAAGCTC
ACTCATCAAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis