Browse Element(s) Details


OsAffx.17537.1.S1_x_at

Description tigr:9637.m00097
TID=OsAffx.17537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0253010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02480OsAffx.16467.1.S1_at9/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.6.S1_s_at6/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.2.S1_s_at5/119+1029014..1030107hypothetical protein
LOC_Os09g02480OsAffx.3425.1.S1_at1/119+1029014..1030107hypothetical protein
LOC_Os09g02490NANA9+1030306..1032991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.3.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.1.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02510OsAffx.17536.1.S1_at11/119+1047804..1050501hypothetical protein
LOC_Os09g02510Os.51198.1.S1_at1/119+1047804..1050501hypothetical protein
LOC_Os09g02520OsAffx.29689.1.S1_at11/119+1051451..1051870hypothetical protein
LOC_Os09g02530Os.27750.1.A1_at11/119+1054332..1055393expressed protein
LOC_Os09g02530OsAffx.17537.1.S1_x_at10/119+1054332..1055393expressed protein
LOC_Os09g02540OsAffx.29690.1.S1_at11/119+1058839..1059630expressed protein
LOC_Os09g02550OsAffx.29691.1.S1_at11/119+1060676..1061128hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_x_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02570OsAffx.29693.1.S1_x_at11/119+1069950..1070345hypothetical protein
LOC_Os09g02580OsAffx.29693.1.S1_x_at3/119+1074066..1074317hypothetical protein
LOC_Os09g02580OsAffx.6499.1.S1_x_at1/119+1074066..1074317hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17537.1.S1_x_at--316--7711Chr09:1054470..1054494 (25 bp)
GGGTGAATTTGACGTCCGCCAGTCT
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--872--1151Chr09:1054490..1054514 (25 bp)
AGTCTCGAACTGATTGCTGCCAACT
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--857--6351Chr09:1054562..1054586 (25 bp)
GATGCCGAGATATCTTGCGTCGCGA
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--787--2291Chr09:1054589..1054613 (25 bp)
AAATGTGCTGCGTTGCGGAAGCTCT
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--885--2931Chr09:1054619..1054643 (25 bp)
AAGGCATGCCCTGTTTCTGATGCAG
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--1129--4771Chr09:1054665..1054689 (25 bp)
GCTGCCCACGTCTTGTCAAGGTGAA
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--576--8091Chr09:1054751..1054775 (25 bp)
GGAGCCCTTGCTGTGAATGTTGACA
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--949--5951Chr09:1054835..1054859 (25 bp)
GAGAATGCTGGTAGCGACACCCTGC
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--714--2171Chr09:1054851..1054875 (25 bp)
ACACCCTGCCGGACGATTTGGATGA
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--1029--2911Chr09:1054957..1054981 (25 bp)
AAGGAGCTTGTCTGTTTCCATGTTC
LOC_Os09g02530
OsAffx.17537.1.S1_x_at--78--911NONE
AGGCGGCCGCGTGGGATATTCCTCC
NONE
Target Sequence 
GGGTGAATTTGACGTCCGCCAGTCTCGAACTGATTGCTGCCAACTGCCCTGCCCTTGAGCGCCTCGCACTGTGCGGGTCT
GATACGTTCGGGGATGCCGAGATATCTTGCGTCGCGACGAAATGTGCTGCGTTGCGGAAGCTCTGCATCAAGGCATGCCC
TGTTTCTGATGCAGGAATGGATAAGCTCGCTCAAGGCTGCCCACGTCTTGTCAAGGTGAAGGTGAAGAAGTGTCAGGGAG
TGACGCCAGAGTGTGCTGAGCGGCTTCGGGCTAGCCGCAACGGAGCCCTTGCTGTGAATGTTGACACGCCAGGTGGTGCT
GGTGAATTGCAGGATGCTAGGAGCGTGGATGAGAGTGGTGTCCTGGAGAATGCTGGTAGCGACACCCTGCCGGACGATTT
GGATGATCGGATAGGGGGCCCTGACCTTTCCTGTGGCAGCAGCGGCAGGCCATCGGGGTGGAAAGCACGGATGGGTGCTT
TTATGTCAAGGAGCTTGTCTGTTTCCATGTTCCGGAGGCGGCCGCGTGGGATATTCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17537.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis