Browse Element(s) Details


OsAffx.1769.1.S1_at

Description gb:NM_183919.1
DB_XREF= gi:34894965
GEN=B1088D01.5
TID=OsAffx.1769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1088D01.5 (B1088D01.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g192501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19180Os.23221.1.A1_at11/1112+11135389..11138969expressed protein
LOC_Os12g19190NANA12+11140108..11143097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19200NANA12+11145943..11146302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19210NANA12+11148547..11149332transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.47463.1.S1_x_at2/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.14491.2.S1_x_at1/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19230OsAffx.8299.1.S1_x_at1/1112+11154160..11154480hypothetical protein
LOC_Os12g19250OsAffx.1769.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19250OsAffx.20566.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19270OsAffx.19743.1.S1_at11/1112+11168735..11170567hypothetical protein
LOC_Os12g19280OsAffx.19744.1.S1_at11/1112+11171928..11173479hypothetical protein
LOC_Os12g19290Os.6467.1.A1_s_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed
LOC_Os12g19290OsAffx.19745.1.S1_at11/1112+11182345..11188916Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1769.1.S1_at--811--2671Chr01:13299548..13299572 (25 bp)
AAGCGACATAGGAGCCTTGATAGCG
NONE
OsAffx.1769.1.S1_at--299--8091Chr01:13299538..13299562 (25 bp)
GGAGCCTTGATAGCGCAAGCCATCG
NONE
OsAffx.1769.1.S1_at--977--296Chr12:11160640..11161023 (25 bp)
ATAGCGCAAGCCATCGAGACAAGTT
LOC_Os12g19250
OsAffx.1769.1.S1_at--1145--5974Chr09:4246353..4246374 (22 bp)
GAGACAAGTTACCTCTTGTCGACAG
NONE
OsAffx.1769.1.S1_at--186--2831Chr01:13299509..13299533 (25 bp)
AAGTTACCTCTTGTCGACAGATTGC
NONE
OsAffx.1769.1.S1_at--843--9971Chr01:13299505..13299529 (25 bp)
TACCTCTTGTCGACAGATTGCAGCC
NONE
OsAffx.1769.1.S1_at--1139--3611Chr01:13299500..13299524 (25 bp)
CTTGTCGACAGATTGCAGCCGATGT
NONE
OsAffx.1769.1.S1_at--688--1251Chr01:13299491..13299515 (25 bp)
AGATTGCAGCCGATGTCCCGACTTG
NONE
OsAffx.1769.1.S1_at--1072--10731Chr01:13299488..13299512 (25 bp)
TTGCAGCCGATGTCCCGACTTGAAG
NONE
OsAffx.1769.1.S1_at--565--4512Chr10:11328692..11328896 (25 bp)
GCCGATGTCCCGACTTGAAGCAAGA
NONE
OsAffx.1769.1.S1_at--990--7237Chr11:10366538..10366557 (20 bp)
GTCCCGACTTGAAGCAAGAACTCGT
NONE
Target Sequence 
AAGCGACATAGGAGCCTTGATAGCGCAAGCCATCGAGACAAGTTACCTCTTGTCGACAGATTGCAGCCGATGTCCCGACT
TGAAGCAAGAACTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis