Browse Element(s) Details


OsAffx.17711.1.S1_at

Description tigr:9637.m01242
TID=OsAffx.17711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1520011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15160NANA9+9201209..9203452retrotransposon protein, putative, unclassified
LOC_Os09g15170OsAffx.17709.1.S1_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15170Os.23153.1.S1_s_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15180OsAffx.14234.1.S1_at2/119+9214022..9218387transposon protein, putative, unclassified, expressed
LOC_Os09g15190OsAffx.17710.1.S1_at11/119+9219534..9220634hypothetical protein
LOC_Os09g15200OsAffx.17711.1.S1_at11/119+9227997..9230565hypothetical protein
LOC_Os09g15200OsAffx.14065.1.S1_at1/119+9227997..9230565hypothetical protein
LOC_Os09g15210OsAffx.6281.1.S1_at11/119+9232698..9233597hypothetical protein
LOC_Os09g15220Os.46012.2.S1_x_at10/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.27088.1.A1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.46012.3.S1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.54691.1.S1_x_at1/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15230Os.46808.1.S1_at11/119+9244914..9245867expressed protein
LOC_Os09g15230Os.46808.2.S1_x_at2/119+9244914..9245867expressed protein
LOC_Os09g15240OsAffx.17712.1.S1_at11/119+9250213..9254027Retinal pigment epithelial membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17711.1.S1_at--1045--2851Chr09:9229986..9230010 (25 bp)
AAGTGCGGCACAGGTTCTCGGCATT
LOC_Os09g15200
OsAffx.17711.1.S1_at--370--1651Chr09:9230016..9230040 (25 bp)
AGCGCTTATAGCAACCGTGACATTT
LOC_Os09g15200
OsAffx.17711.1.S1_at--265--1171Chr09:9230116..9230140 (25 bp)
AGCTACCCTTTTGACGCGTTCATTA
LOC_Os09g15200
OsAffx.17711.1.S1_at--397--211Chr09:9230161..9230185 (25 bp)
ATTTGCTCTTTGCTAGCTACCGTGA
LOC_Os09g15200
OsAffx.17711.1.S1_at--1063--4631Chr09:9230242..9230266 (25 bp)
GCGTTCTCTATGCTCTTGATGCAGA
LOC_Os09g15200
OsAffx.17711.1.S1_at--391--6071Chr09:9230265..9230289 (25 bp)
GAGTTCAACTACGAGCTTCACTGTT
LOC_Os09g15200
OsAffx.17711.1.S1_at--1035--4851Chr09:9230316..9230340 (25 bp)
GCTAGCTCCTGTTACTCTTAATGCA
LOC_Os09g15200
OsAffx.17711.1.S1_at--789--3571Chr09:9230363..9230387 (25 bp)
CATTTGTTTCTCTGCTACCTGGAAA
LOC_Os09g15200
OsAffx.17711.1.S1_at--49--7691Chr09:9230399..9230423 (25 bp)
GGGTATCCCTAGCTATCGCAAACAC
LOC_Os09g15200
OsAffx.17711.1.S1_at--21--1651Chr09:9230451..9230475 (25 bp)
AGCGATGTCCCAAGCAAGGCCAGTT
LOC_Os09g15200
OsAffx.17711.1.S1_at--610--4351Chr09:9230470..9230494 (25 bp)
CCAGTTCTCCTGTTCACGTGGAAAA
LOC_Os09g15200
Target Sequence 
AAGTGCGGCACAGGTTCTCGGCATTTCTTCAGCGCTTATAGCAACCGTGACATTTGCAGCTGCATTCACGTTGCCTGGAG
GTTACAGAGCAGATGACCACACTGATGGTGGTACACCAACACTTGCTGGGAGCTACCCTTTTGACGCGTTCATTATCTCG
AACAGCCTAGCATTCATTTGCTCTTTGCTAGCTACCGTGAGTCTGCTCTACTCTGGGATACAATCGAGGGACATCTCCAT
CCGGCGCAGGTACTACGCGTTCTCTATGCTCTTGATGCAGAGTTCAACTACGAGCTTCACTGTTGCCTTCGCCATGGGAA
TGTACCTGGTGCTAGCTCCTGTTACTCTTAATGCAGCAGTGTCTGTCTGCATCATAGCATTTGTTTCTCTGCTACCTGGA
AATATGGAAATCGGGGTATCCCTAGCTATCGCAAACACATTGAGGATTAGATTGGGAATTTGGGCAGCGATGTCCCAAGC
AAGGCCAGTTCTCCTGTTCACGTGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis