Browse Element(s) Details


OsAffx.1772.1.S1_at

Description gb:NM_183894.1
DB_XREF= gi:34894915
GEN=OJ1008_F01.13
TID=OsAffx.1772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1008_F01.13 (OJ1008_F01.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2321011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23180NANA1+13009205..13011734retrotransposon protein, putative, unclassified
LOC_Os01g23190NANA1+13014932..13015777hypothetical protein
LOC_Os01g23200OsAffx.20329.1.S1_at7/111+13016204..13020541retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23210OsAffx.1772.1.S1_at11/111+13030899..13036379retrotransposon protein, putative, unclassified
LOC_Os01g23210OsAffx.32036.1.S1_at1/111+13030899..13036379retrotransposon protein, putative, unclassified
LOC_Os01g23210Os.10731.2.A1_at1/111+13030899..13036379retrotransposon protein, putative, unclassified
LOC_Os01g23219NANA1+13044374..13044676hypothetical protein
LOC_Os01g23230OsAffx.31869.4.S1_x_at10/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.4.S1_at9/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_x_at8/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_s_at4/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.3.S1_at3/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23230OsAffx.31869.5.S1_x_at2/111+13047126..13047884retrotransposon protein, putative, unclassified
LOC_Os01g23239NANA1+13048865..13049167hypothetical protein
LOC_Os01g23248Os.27541.1.A1_at1/111+13053769..13054173NA
LOC_Os01g23260OsAffx.11167.1.S1_at7/111+13056099..13056853hypothetical protein
LOC_Os01g23260Os.54691.1.S1_x_at1/111+13056099..13056853hypothetical protein
LOC_Os01g23270NANA1+13059081..13061516retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1772.1.S1_at--1027--5231Chr01:13030930..13030954 (25 bp)
GAATCATCCCTGTGGAGCGTCGCTG
LOC_Os01g23210
OsAffx.1772.1.S1_at--425--8831Chr01:13031009..13031033 (25 bp)
TGATAACAAGCGCACATCCGTCTTC
LOC_Os01g23210
OsAffx.1772.1.S1_at--403--553Chr10:1531167..1531349 (25 bp)
ATCCGTCTTCGTTTCCGCCGTGATG
NONE
OsAffx.1772.1.S1_at--235--4291Chr01:13031358..13031382 (25 bp)
CCTCTGTGAACTCCCAAGCTTGGTG
LOC_Os01g23210
OsAffx.1772.1.S1_at--645--7631Chr01:13031468..13031492 (25 bp)
GGGAGCTCTATAGCGGCGTTCCACA
LOC_Os01g23210
OsAffx.1772.1.S1_at--61--10191Chr01:13031476..13031500 (25 bp)
TATAGCGGCGTTCCACAGTGATAAT
LOC_Os01g23210
OsAffx.1772.1.S1_at--954--6451Chr01:13031495..13031519 (25 bp)
GATAATTCCGATGGCTGTGACCCTC
LOC_Os01g23210
OsAffx.1772.1.S1_at--607--7711Chr01:13031521..13031545 (25 bp)
GGGTGTAGGTCAGCGACAGCACTCC
LOC_Os01g23210
OsAffx.1772.1.S1_at--818--5631Chr01:13031535..13031559 (25 bp)
GACAGCACTCCACAGCACAGGTAAA
LOC_Os01g23210
OsAffx.1772.1.S1_at--984--3291Chr01:13031550..13031574 (25 bp)
CACAGGTAAAATTCGGTGGCGCCGT
LOC_Os01g23210
OsAffx.1772.1.S1_at--1112--2091Chr01:13031589..13031613 (25 bp)
ACATCGCCGTCGAGATATGCGAGAG
LOC_Os01g23210
Target Sequence 
GAATCATCCCTGTGGAGCGTCGCTGCCGCCTGGTCGAGGACGAGGAGTCGCTCGGGGAGGAGGAGCTCGAGCTTGCCGGT
GATAACAAGCGCACATCCGTCTTCGTTTCCGCCGTGATGGCGGCGTCACGGCCCCTGCCCCGCTTTGCCTCCGGCGAGTC
CACTCGCAACCTTGCCTCTGTGAACTCCCAAGCTTGGTGGCTTGAGAGAGAGGGGAAGGAGGTAGCAAAAGGAAGGTCAG
AGTTCGGTGAGGATTCCAACGGCGGCAAGCCGGCGACCATCGAGGGGAGCTCTATAGCGGCGTTCCACAGTGATAATTCC
GATGGCTGTGACCCTCGGGGTGTAGGTCAGCGACAGCACTCCACAGCACAGGTAAAATTCGGTGGCGCCGTGGCAACGCT
CCTCTACATCGCCGTCGAGATATGCGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis