Browse Element(s) Details


OsAffx.17723.1.S1_at

Description tigr:9637.m01319
TID=OsAffx.17723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1586011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15850OsAffx.6289.1.S1_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.1.A1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.2.S1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15860OsAffx.17723.1.S1_at11/119+9692656..9694069expressed protein
LOC_Os09g15870NANA9+9697514..9697813hypothetical protein
LOC_Os09g15880NANA9+9704395..9705944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15890Os.46862.1.S1_at5/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15890Os.47130.4.A1_x_at4/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15890OsAffx.28575.1.S1_at1/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15900Os.28943.1.S1_x_at3/119+9712598..9715502retrotransposon protein, putative, unclassified
LOC_Os09g15910NANA9+9717101..9717337hypothetical protein
LOC_Os09g15920Os.24831.1.S1_x_at9/119+9719008..9721699retrotransposon protein, putative, unclassified
LOC_Os09g15920Os.24831.3.S1_x_at6/119+9719008..9721699retrotransposon protein, putative, unclassified
LOC_Os09g15920Os.53142.1.S1_at3/119+9719008..9721699retrotransposon protein, putative, unclassified
LOC_Os09g15920Os.24831.4.S1_x_at1/119+9719008..9721699retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17723.1.S1_at--355--7051Chr09:9692702..9692726 (25 bp)
GTAACAATGCACATCGGAAACGATT
LOC_Os09g15860
OsAffx.17723.1.S1_at--1097--3271Chr09:9693393..9693417 (25 bp)
CAAACGTCCATCCAAAGCAAGGGTA
LOC_Os09g15860
OsAffx.17723.1.S1_at--520--6951Chr09:9693584..9693604 (21 bp)
GTAGAGATCATCATCCAGATACATG
LOC_Os09g15860
OsAffx.17723.1.S1_at--368--2431Chr09:9693650..9693671 (22 bp)
AAAAGGCGGCTAGTGTCACCGGCGT
LOC_Os09g15860
OsAffx.17723.1.S1_at--287--7551Chr09:9693801..9693825 (25 bp)
GTGGCGGCAACAGGAACCTGCTGAT
LOC_Os09g15860
OsAffx.17723.1.S1_at--713--7471Chr09:9693840..9693864 (25 bp)
GTGTGGACACCAACAAGCTCCTGAA
LOC_Os09g15860
OsAffx.17723.1.S1_at--577--1991Chr09:9693868..9693892 (25 bp)
ACTCAGAAACAATGTAGGCGCCGCT
LOC_Os09g15860
OsAffx.17723.1.S1_at--1161--10091Chr09:9693882..9693906 (25 bp)
TAGGCGCCGCTGATATCGTGGAGAC
LOC_Os09g15860
OsAffx.17723.1.S1_at--613--1511Chr09:9693943..9693967 (25 bp)
AGCAGTCTCCGGAAGCAAGAACTTC
LOC_Os09g15860
OsAffx.17723.1.S1_at--246--5371Chr09:9693991..9694015 (25 bp)
GAAGAGCTGGTCGTTTGTGAAACAA
LOC_Os09g15860
OsAffx.17723.1.S1_at--1024--1411Chr09:9694015..9694039 (25 bp)
AGAAAGCTTGGTCGATCAACTTAAC
LOC_Os09g15860
Target Sequence 
GTAACAATGCACATCGGAAACGATTTAGTACCGGCCACCAAACGTCCATCCAAAGCAAGGGTAAACGGAAGCTTCGTTTC
GAAAAAGTAGAGATCATCATCCAGATACATGATGAAAAAGAGAAATGTATGAAGAAGACGATGAAAAAGGCGATGAAAAA
GGCGGCTAGTGTCACCGGCGTGCAATCGGTGACGCTGTGTGGCGGCAACAGGAACCTGCTGATGGTGATCGGTGAGGGTG
TGGACACCAACAAGCTCCTGAAGAAACTCAGAAACAATGTAGGCGCCGCTGATATCGTGGAGACGATGCCGGCGGAGGCC
GAAGAGTTCGAGGCAGCAGCAGCAGTCTCCGGAAGCAAGAACTTCATGAAGATGATGCCGCGGTGGCCGAAGAGCTGGTC
GTTTGTGAAACAAGAAAGCTTGGTCGATCAACTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis