Browse Element(s) Details


OsAffx.17740.1.S1_at

Description tigr:9637.m01374
TID=OsAffx.17740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1641011/11hypothetical protein
LOC_Os07g080102/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16380Os.24863.1.A1_at3/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16380Os.55739.1.S1_x_at2/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16380OsAffx.22564.2.S1_at1/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16390OsAffx.29873.1.S1_at11/119+10022366..10022878hypothetical protein
LOC_Os09g16400NANA9+10027296..10030371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16410OsAffx.17740.1.S1_at11/119+10038307..10038856hypothetical protein
LOC_Os09g16420NANA9+10041143..10041733retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.1.S1_x_at5/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.2.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.3.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.5.S1_x_at2/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16440NANA9+10049545..10055913transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17740.1.S1_at--1059--6931Chr09:10038651..10038675 (25 bp)
GTAGTTGATGCAGATGCGGCTAACA
LOC_Os09g16410
OsAffx.17740.1.S1_at--175--9811Chr09:10038610..10038634 (25 bp)
TAACGGGATAGAGAAGCCTGGGATA
LOC_Os09g16410
OsAffx.17740.1.S1_at--746--3291Chr09:10038566..10038590 (25 bp)
CAAAGGCCACTAATGTAGATGCAGA
LOC_Os09g16410
OsAffx.17740.1.S1_at--1113--372Chr09:10038499..10038523 (25 bp)
ATCACAATGGCAGGCTATGTTTTGG
LOC_Os09g16410
OsAffx.17740.1.S1_at--252--8312Chr09:10038487..10038511 (25 bp)
GGCTATGTTTTGGACTGATGCTTTT
LOC_Os09g16410
OsAffx.17740.1.S1_at--175--5691Chr09:10038475..10038499 (25 bp)
GACTGATGCTTTTAACGGTGACCCA
LOC_Os09g16410
OsAffx.17740.1.S1_at--177--2571Chr09:10038462..10038486 (25 bp)
AACGGTGACCCAGATAGATTGAATG
LOC_Os09g16410
OsAffx.17740.1.S1_at--202--291Chr09:10038386..10038410 (25 bp)
ATACCGTGTGTATTAAAGAGGCAAC
LOC_Os09g16410
OsAffx.17740.1.S1_at--918--6191Chr09:10038369..10038393 (25 bp)
GAGGCAACAATACCTTCTATGATTG
LOC_Os09g16410
OsAffx.17740.1.S1_at--110--6591Chr09:10038349..10038373 (25 bp)
GATTGTAACTCAGATGTTCCCGATG
LOC_Os09g16410
OsAffx.17740.1.S1_at--294--6291Chr09:10038337..10038361 (25 bp)
GATGTTCCCGATGAGTCTGATCCAC
LOC_Os09g16410
Target Sequence 
GTAGTTGATGCAGATGCGGCTAACAGGATAGAGGAGCCTGCTAACGGGATAGAGAAGCCTGGGATAGGAGTAGATGTTGC
TAATACAAAGGCCACTAATGTAGATGCAGATGTTGCTGGTGGGAAGGAGCATGGCACCACAATACATGATATATCACAAT
GGCAGGCTATGTTTTGGACTGATGCTTTTAACGGTGACCCAGATAGATTGAATGAGGAAGATGAGCCAATTGGTGTTGAT
GAGGAGCACTTATATGGGGTTGATGATACCGTGTGTATTAAAGAGGCAACAATACCTTCTATGATTGTAACTCAGATGTT
CCCGATGAGTCTGATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis