Browse Element(s) Details


OsAffx.17773.1.S1_at

Description tigr:9637.m01597
TID=OsAffx.17773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to OsD305
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1853011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18490Os.45976.1.S1_x_at3/119+11331584..11335336transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18500Os.46306.1.S1_x_at2/119+11337814..11340899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18510NANA9+11342164..11343633hypothetical protein
LOC_Os09g18520OsAffx.6325.2.S1_at10/119+11347301..11348992oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g18530OsAffx.17773.1.S1_at11/119+11359267..11362179Protein kinase domain containing protein, expressed
LOC_Os09g18540OsAffx.29918.1.S1_at11/119+11362791..11366120leucine-rich repeat protein kinase, putative
LOC_Os09g18550OsAffx.6326.1.S1_at11/119+11369318..11371006Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18560Os.52812.1.S1_at11/119+11373270..11374130hypothetical protein
LOC_Os09g18569NANA9+11380762..11381015NA
LOC_Os09g18580NANA9+11382326..11382809hypothetical protein
LOC_Os09g18594Os.27681.1.S1_a_at11/119+11386161..11395235Protein kinase domain containing protein, expressed
LOC_Os09g18594Os.27681.2.S1_at11/119+11386161..11395235Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17773.1.S1_at--880--5111Chr09:11360079..11360228 (25 bp)
GCACAAGGGTGTGTACTGCCTATAA
LOC_Os09g18530
OsAffx.17773.1.S1_at--979--231Chr09:11359949..11359973 (25 bp)
ATATATCAGTCACTGCTGCTGGCAC
LOC_Os09g18530
OsAffx.17773.1.S1_at--276--5991Chr09:11359575..11359599 (25 bp)
GAGACTGTAACAGGTGAACCACCCA
LOC_Os09g18530
OsAffx.17773.1.S1_at--8--5431Chr09:11359560..11359584 (25 bp)
GAACCACCCATTGTGCCAGGCGTTG
LOC_Os09g18530
OsAffx.17773.1.S1_at--506--8271Chr09:11359535..11359559 (25 bp)
GGCATGTCGTGCAGCGTGTGAAACA
LOC_Os09g18530
OsAffx.17773.1.S1_at--93--4071Chr09:11359501..11359525 (25 bp)
CGATGGCGACATCAGTGCGATTGTT
LOC_Os09g18530
OsAffx.17773.1.S1_at--865--6591Chr09:11359483..11359507 (25 bp)
GATTGTTGACCCACGTCTTGAAGAT
LOC_Os09g18530
OsAffx.17773.1.S1_at--433--2071Chr09:11359451..11359475 (25 bp)
ACATAGGTTCGGTCTGGAAGGTCGT
LOC_Os09g18530
OsAffx.17773.1.S1_at--754--3991Chr09:11359429..11359453 (25 bp)
CGTGGACATAGCACTGCTGTGCACA
LOC_Os09g18530
OsAffx.17773.1.S1_at--288--5931Chr09:11359362..11359386 (25 bp)
GAGCAGCTGAAACATGCCTTGGCAT
LOC_Os09g18530
OsAffx.17773.1.S1_at--272--5411Chr09:11359332..11359356 (25 bp)
GAAGCTCGCCATATCGATGGCCACA
LOC_Os09g18530
Target Sequence 
GCACAAGGGTGTGTACTGCCTATAATACACAGAGATGTGAAGTCACACAACATTCTACTGGGTGAAGATATGCATGCCAA
GATCTCTGATTTTGGCTTGTCCAAGTCTTACATTAATGAAGCACAAACTCATATATCAGTCACTGCTGCTGGCACCATAG
GCTACATTGATCCAGAGTACTACTTCAGCAGCAGGCTCACCATGAGAAGTGACGTGTTCAGCTTTGGAGTGGTTTTGCTA
GAGACTGTAACAGGTGAACCACCCATTGTGCCAGGCGTTGGGCATGTCGTGCAGCGTGTGAAACAGAAGGTTAGCGATGG
CGACATCAGTGCGATTGTTGACCCACGTCTTGAAGATGCATATGACATAGGTTCGGTCTGGAAGGTCGTGGACATAGCAC
TGCTGTGCACAAGGGAGGTGTCTGATGATAGACCAACAATGACAGAAGTGGTGGAGCAGCTGAAACATGCCTTGGCATTG
GAAGAAGCTCGCCATATCGATGGCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis