Browse Element(s) Details


OsAffx.17780.1.S1_at

Description tigr:9637.m01638
TID=OsAffx.17780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1944010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19400OsAffx.6333.1.S1_at10/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.32260.1.A1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19400OsAffx.9350.1.S1_at1/119+11610265..11615749Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19409NANA9+11621346..11621784NA
LOC_Os09g19420OsAffx.29923.1.S1_at11/119+11623253..11623837hypothetical protein
LOC_Os09g19430NANA9+11624499..11629753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19440OsAffx.17780.1.S1_at10/119+11637039..11638060hypothetical protein
LOC_Os09g19450OsAffx.32056.1.S1_x_at7/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.3.S1_s_at6/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.4.S1_s_at5/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.10637.1.S1_s_at3/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19450OsAffx.32056.1.S1_at2/119+11643015..11647246transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19460NANA9+11647556..11647918hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19470OsAffx.17781.1.S1_x_at11/119+11654238..11654534hypothetical protein
LOC_Os09g19480OsAffx.17782.1.S1_at11/119+11660025..11660862hypothetical protein
LOC_Os09g19490OsAffx.29924.1.S1_at11/119+11661543..11661995hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17780.1.S1_at--360--4211NONE
GCCCGTTAAAGGTGGAGTTGATAAT
NONE
OsAffx.17780.1.S1_at--1038--6471Chr09:11637809..11637833 (25 bp)
GATACTTTTAAAACAATGCTGCGTG
LOC_Os09g19440
OsAffx.17780.1.S1_at--134--3031Chr09:11637823..11637847 (25 bp)
AATGCTGCGTGATATTGAGGACCCA
LOC_Os09g19440
OsAffx.17780.1.S1_at--659--6171Chr09:11637839..11637863 (25 bp)
GAGGACCCAGGTTACAACAAGAGAG
LOC_Os09g19440
OsAffx.17780.1.S1_at--526--9631Chr09:11637879..11637903 (25 bp)
TCAGGATGGTGGGTAATTTCGAGAC
LOC_Os09g19440
OsAffx.17780.1.S1_at--250--3131Chr09:11637893..11637917 (25 bp)
AATTTCGAGACACCTCTGTATGCCG
LOC_Os09g19440
OsAffx.17780.1.S1_at--1125--3771Chr09:11637906..11637930 (25 bp)
CTCTGTATGCCGGATGTGTAGTGAA
LOC_Os09g19440
OsAffx.17780.1.S1_at--122--7371Chr09:11637926..11637950 (25 bp)
GTGAAACACACGAAATTATCTGCGA
LOC_Os09g19440
OsAffx.17780.1.S1_at--720--5591Chr09:11637937..11637961 (25 bp)
GAAATTATCTGCGATCTTGGATCTG
LOC_Os09g19440
OsAffx.17780.1.S1_at--572--2831Chr09:11637997..11638021 (25 bp)
AAGTTTCACACAACTGCTTCGATTG
LOC_Os09g19440
OsAffx.17780.1.S1_at--418--2171Chr09:11638006..11638030 (25 bp)
ACAACTGCTTCGATTGTTAAAGGAC
LOC_Os09g19440
Target Sequence 
GCCCGTTAAAGGTGGAGTTGATAATGATACTTTTAAAACAATGCTGCGTGATATTGAGGACCCAGGTTACAACAAGAGAG
ACTATGGGAAGTTTATCAGGATGGTGGGTAATTTCGAGACACCTCTGTATGCCGGATGTGTAGTGAAACACACGAAATTA
TCTGCGATCTTGGATCTGATAAAGTTTAAGACAAGTAATGAACGGAAAGATAAAAGTTTCACACAACTGCTTCGATTGTT
AAAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis