Browse Element(s) Details


OsAffx.17790.1.S1_at

Description tigr:9637.m01703
TID=OsAffx.17790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2005011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20020OsAffx.29932.1.S1_at11/119+11988757..11992427VQ motif family protein, expressed
LOC_Os09g20030Os.49560.1.S1_at11/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20030Os.49560.1.S2_at10/119+11997383..12000228NB-ARC domain containing protein, expressed
LOC_Os09g20040OsAffx.29933.1.S1_at11/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20040Os.27612.1.S1_at1/119+12003418..12009545NB-ARC domain containing protein, expressed
LOC_Os09g20050OsAffx.17790.1.S1_at11/119+12013838..12017214hypothetical protein
LOC_Os09g20060Os.26886.2.S1_s_at8/119+12020477..12022219hypothetical protein
LOC_Os09g20060Os.26886.6.S1_s_at7/119+12020477..12022219hypothetical protein
LOC_Os09g20060OsAffx.16467.1.S1_at4/119+12020477..12022219hypothetical protein
LOC_Os09g20060OsAffx.3425.1.S1_at1/119+12020477..12022219hypothetical protein
LOC_Os09g20070NANA9+12022469..12023593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g20080Os.26886.3.S1_x_at6/119+12025537..12027725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g20090NANA9+12029279..12034190L-ascorbate oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17790.1.S1_at--569--8871Chr09:12014187..12014211 (25 bp)
TGATGGGCTTTCTGTATCCGCTCGA
LOC_Os09g20050
OsAffx.17790.1.S1_at--937--10491Chr09:12016699..12016723 (25 bp)
TTCAACCTTTCCGTGATGTCAGCAT
LOC_Os09g20050
OsAffx.17790.1.S1_at--1083--1531Chr09:12016719..12016743 (25 bp)
AGCATCCAGAGTTCACGGTGCGACA
LOC_Os09g20050
OsAffx.17790.1.S1_at--1134--7771Chr09:12016735..12016759 (25 bp)
GGTGCGACACGTACGGAGAACTCCC
LOC_Os09g20050
OsAffx.17790.1.S1_at--271--3811Chr09:12016816..12016840 (25 bp)
CTCCTGTACGATCATCTCCAATATT
LOC_Os09g20050
OsAffx.17790.1.S1_at--880--2451Chr09:12016846..12016870 (25 bp)
AACAATGGTCTAGAGGTCGCCGCCG
LOC_Os09g20050
OsAffx.17790.1.S1_at--838--1871Chr09:12016879..12016903 (25 bp)
ACGATGATCGCCGTGCTGATCGATC
LOC_Os09g20050
OsAffx.17790.1.S1_at--887--9111Chr09:12016892..12016916 (25 bp)
TGCTGATCGATCTCGCGGACAAGAT
LOC_Os09g20050
OsAffx.17790.1.S1_at--841--8611Chr09:12017126..12017150 (25 bp)
TGGTGAACGACGCAGTCACAGTCAC
LOC_Os09g20050
OsAffx.17790.1.S1_at--223--7091Chr09:12017146..12017170 (25 bp)
GTCACAGGACACTCAGGTTGCACCA
LOC_Os09g20050
OsAffx.17790.1.S1_at--809--991Chr09:12017160..12017184 (25 bp)
AGGTTGCACCAACGACCCGAACACG
LOC_Os09g20050
Target Sequence 
TGATGGGCTTTCTGTATCCGCTCGATTTCCAGGCCCAGCGCCCGAAAGGTGATGGGGCCACACGTTTCAACCTTTCCGTG
ATGTCAGCATCCAGAGTTCACGGTGCGACACGTACGGAGAACTCCCCCCAGGCGCCGCCGCCGCCGCCGGCCGCCGCCAA
CTCGCACCACGTCGCCGCCGACCTCCTGTACGATCATCTCCAATATTCAAGCAACAATGGTCTAGAGGTCGCCGCCGCGA
CGACGACGATGATCGCCGTGCTGATCGATCTCGCGGACAAGATCAAGAAGAAGAGGAGCAGACGGGGGAAAGGCTCCCGG
CCGGCGGCCGTCGCCGTCGCCATGGCCCTTGTCATGCTCCTTGCCGTTGCTGCGCTCGTCAACCCTACGGCGGCGGCGCG
GCCGTTATATGGTGGCGGCGGCGGCGCCGGCGCCGGCGGCCATGACGAAGCAGCAGCTGCTGCTGCTGCTGCACCGGCGA
TGACGGTGGCGGTGGTGAACGACGCAGTCACAGTCACAGGACACTCAGGTTGCACCAACGACCCGAACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis