Browse Element(s) Details


OsAffx.17824.1.S1_at

Description tigr:9637.m01844
TID=OsAffx.17824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MXC7.12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2141011/11BED zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21380Os.55241.1.S1_x_at11/119+12912670..12913862expressed protein
LOC_Os09g21390OsAffx.24532.1.A1_at2/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21390Os.54381.1.S1_at1/119+12915725..12918592retrotransposon protein, putative, unclassified
LOC_Os09g21400OsAffx.17823.1.S1_at11/119+12919183..12921875hypothetical protein
LOC_Os09g21410OsAffx.17824.1.S1_at11/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.45902.1.A1_x_at4/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410OsAffx.10222.1.S1_x_at2/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21410Os.56372.1.S1_at1/119+12930337..12933395BED zinc finger family protein
LOC_Os09g21420OsAffx.17825.1.S1_at11/119+12934735..12943506hAT family dimerisation domain containing protein
LOC_Os09g21430OsAffx.29961.1.S1_at11/119+12950142..12960778hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17824.1.S1_at--592--6031Chr09:12932040..12932064 (25 bp)
GAGATGCTCAGGTACAGACGATGCG
LOC_Os09g21410
OsAffx.17824.1.S1_at--882--1391Chr09:12932025..12932049 (25 bp)
AGACGATGCGATGCCTCACAGGAAG
LOC_Os09g21410
OsAffx.17824.1.S1_at--969--10691Chr09:12931991..12932015 (25 bp)
TTGCCTAACACCCTGAATGACATAA
LOC_Os09g21410
OsAffx.17824.1.S1_at--442--8911Chr09:12931911..12931935 (25 bp)
TGAGCAGAAGAATCCTACCTCGCCT
LOC_Os09g21410
OsAffx.17824.1.S1_at--887--9951Chr09:12931896..12931920 (25 bp)
TACCTCGCCTGACATCACTAATAAT
LOC_Os09g21410
OsAffx.17824.1.S1_at--285--2411Chr09:12931832..12931856 (25 bp)
AAACAGAAGTGCACTCCTGCTGGCA
LOC_Os09g21410
OsAffx.17824.1.S1_at--402--9271Chr09:12931818..12931842 (25 bp)
TCCTGCTGGCACGAATCTGAAGAAT
LOC_Os09g21410
OsAffx.17824.1.S1_at--710--5671Chr09:12931764..12931788 (25 bp)
GACATTGGCAATGTGCGGGTACCTT
LOC_Os09g21410
OsAffx.17824.1.S1_at--582--2511Chr09:12931661..12931685 (25 bp)
AACATTGGTGGTGGCTTTCTGCAAC
LOC_Os09g21410
OsAffx.17824.1.S1_at--1140--7471Chr09:12931562..12931586 (25 bp)
GTGTGGCACTATGATCCATTCTTGG
LOC_Os09g21410
OsAffx.17824.1.S1_at--824--10851Chr09:12931541..12931565 (25 bp)
TTGGCCTTTTTGTGCCTAAGTGTTC
LOC_Os09g21410
Target Sequence 
GAGATGCTCAGGTACAGACGATGCGATGCCTCACAGGAAGGATCCTGCCTTGCCTAACACCCTGAATGACATAAACCGGA
GGAGTCAAGAGATTGGCAAGAGTTTAGCTCGTAAGAAACTCGCAACACGTGAGCAGAAGAATCCTACCTCGCCTGACATC
ACTAATAATGATCAGAAGGATCAATGGGATGATGAACACCCAGTGCTTAAACAGAAGTGCACTCCTGCTGGCACGAATCT
GAAGAATCCTGAGGTTGATCAGAATGGACTCATCCAGACATTGGCAATGTGCGGGTACCTTCCATTGATGATGCACAATG
ATAGTTTTAGGAAGTGTGTTCCTTGCTTCGATTCTATGGGGAAGATGCCAGCGAACACTAACATTGGTGGTGGCTTTCTG
CAACTGTTTGACAAAGAAAAGGCTAAGGTGAAGGAGAAGTTTTCTGCTTTGAGCAGTCGGGTTTGCTTGAGTGCTCATGT
GTGGCACTATGATCCATTCTTGGCCTTTTTGTGCCTAAGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis