Browse Element(s) Details


OsAffx.17841.1.S1_at

Description tigr:9637.m01915
TID=OsAffx.17841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphomannose isomerase type I
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2209011/11Phosphomannose isomerase type I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22040Os.50915.1.S1_at1/119+13351011..13353250hypothetical protein
LOC_Os09g22040OsAffx.29979.1.S1_x_at1/119+13351011..13353250hypothetical protein
LOC_Os09g22040OsAffx.29979.1.S1_s_at1/119+13351011..13353250hypothetical protein
LOC_Os09g22050OsAffx.27757.1.S1_at1/119+13353553..13355385hypothetical protein
LOC_Os09g22060NANA9+13355473..13356645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22070Os.50915.1.S1_at2/119+13357357..13360396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22080NANA9+13363375..13365589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22090OsAffx.17841.1.S1_at11/119+13374891..13378386Phosphomannose isomerase type I family protein
LOC_Os09g22100OsAffx.17842.1.S1_at11/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.6363.1.S1_at8/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_x_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100Os.11595.1.S2_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.16438.1.S1_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22110OsAffx.22465.1.S1_at1/119+13389297..13394136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22120NANA9+13395570..13400463retrotransposon protein, putative, unclassified
LOC_Os09g22130OsAffx.17843.1.S1_at11/119+13402497..13403049hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004476molecular_functionmannose-6-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17841.1.S1_at--730--1371Chr09:13375736..13375760 (25 bp)
AGAGCTGGTTTTGTCACTGGAGAGA
LOC_Os09g22090
OsAffx.17841.1.S1_at--436--731Chr09:13375698..13375722 (25 bp)
ATGTTGGTGTTCTAGCAGCACTCTT
LOC_Os09g22090
OsAffx.17841.1.S1_at--909--5091Chr09:13375681..13375705 (25 bp)
GCACTCTTCTTTAACTACGTCAAAC
LOC_Os09g22090
OsAffx.17841.1.S1_at--305--9291Chr09:13375560..13375584 (25 bp)
TCCGTGCTGGTTTGACTCCTAAATA
LOC_Os09g22090
OsAffx.17841.1.S1_at--170--5591Chr09:13375175..13375199 (25 bp)
GAAATCTTGCAAGGCGTTCCTGTGC
LOC_Os09g22090
OsAffx.17841.1.S1_at--660--7831Chr09:13375135..13375159 (25 bp)
GGTACAGCCCTCCATTTGATGAATT
LOC_Os09g22090
OsAffx.17841.1.S1_at--201--7931Chr09:13375104..13375128 (25 bp)
GGATTGGTGCTTGGTACCTGCAGAT
LOC_Os09g22090
OsAffx.17841.1.S1_at--509--5311Chr09:13375079..13375103 (25 bp)
GAAGTTGTTACCATATCCTCGGTGC
LOC_Os09g22090
OsAffx.17841.1.S1_at--747--431Chr09:13375047..13375071 (25 bp)
ATCTGTCTTTCTCGTTATAACCGGG
LOC_Os09g22090
OsAffx.17841.1.S1_at--1044--891Chr09:13374969..13374993 (25 bp)
AGGCGATGTTTTCTTTGTCCCTGCA
LOC_Os09g22090
OsAffx.17841.1.S1_at--1015--6031Chr09:13374938..13374962 (25 bp)
GAGATTAACCTCTCTACCCATAAGT
LOC_Os09g22090
Target Sequence 
AGAGCTGGTTTTGTCACTGGAGAGACAATATCAAGAGGATGTTGGTGTTCTAGCAGCACTCTTCTTTAACTACGTCAAAC
TTAGTCCTGGTGAAGCACTTCACATTGGTGCAAATGAGCCTCACGCATATCTCTCTGGGGAATGCATCGAATGTATGGCC
ACTTCAGACAATGTGGTCCGTGCTGGTTTGACTCCTAAATACAAAGACATACAAACTCTTTGCTCAATGCTAACATATAA
ACAGGCATTCCCTGAAATCTTGCAAGGCGTTCCTGTGCAGCCACACGTAAGGCGGTACAGCCCTCCATTTGATGAATTCG
AGGTGGATTGGTGCTTGGTACCTGCAGATGAAGTTGTTACCATATCCTCGGTGCCAGGCCCATCTGTCTTTCTCGTTATA
ACCGGGGAAGGAGAGCTCCACGCAGAGTCTCTGTCTGGTGGGAAAAAGGAGGCAAAGGAAGGCGATGTTTTCTTTGTCCC
TGCATACACTGAGATTAACCTCTCTACCCATAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis