Browse Element(s) Details


OsAffx.17843.1.S1_at

Description tigr:9637.m01920
TID=OsAffx.17843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2213011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22090OsAffx.17841.1.S1_at11/119+13374891..13378386Phosphomannose isomerase type I family protein
LOC_Os09g22100OsAffx.17842.1.S1_at11/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.6363.1.S1_at8/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_x_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100Os.11595.1.S2_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.16438.1.S1_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22110OsAffx.22465.1.S1_at1/119+13389297..13394136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22120NANA9+13395570..13400463retrotransposon protein, putative, unclassified
LOC_Os09g22130OsAffx.17843.1.S1_at11/119+13402497..13403049hypothetical protein
LOC_Os09g22140NANA9+13404183..13404452hypothetical protein
LOC_Os09g22150OsAffx.18864.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22150OsAffx.8372.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22160OsAffx.17844.1.S1_at10/119+13415253..13416210hypothetical protein
LOC_Os09g22160Os.24478.1.S1_at5/119+13415253..13416210hypothetical protein
LOC_Os09g22170NANA9+13418496..13419538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22180NANA9+13420567..13421655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22190NANA9+13423129..13424518transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.5.S1_x_at4/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.2.S1_x_at3/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.7.S1_s_at1/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22200OsAffx.25936.1.S1_s_at1/119+13426804..13429905transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17843.1.S1_at--129--4751Chr09:13402533..13402557 (25 bp)
GCTGTTCATCATGCATTGGCCAATC
LOC_Os09g22130
OsAffx.17843.1.S1_at--756--10871Chr09:13402548..13402572 (25 bp)
TTGGCCAATCAATCCGGTATGCTAG
LOC_Os09g22130
OsAffx.17843.1.S1_at--120--1151Chr09:13402597..13402621 (25 bp)
AGTCCATGCTTGATGGCACCATCTA
LOC_Os09g22130
OsAffx.17843.1.S1_at--908--3011Chr09:13402623..13402771 (25 bp)
AATGCTGCTCAAGGACCGATTTTTC
LOC_Os09g22130
OsAffx.17843.1.S1_at--498--6531Chr09:13402764..13402788 (25 bp)
GATTTTTCGTCAACACATCGGCTCC
LOC_Os09g22130
OsAffx.17843.1.S1_at--488--9451Chr09:13402781..13402805 (25 bp)
TCGGCTCCCGTGAGAACAACTTCAT
LOC_Os09g22130
OsAffx.17843.1.S1_at--350--10691Chr09:13402827..13402851 (25 bp)
TTCCAACATCTTCAGCGCCAATGAT
LOC_Os09g22130
OsAffx.17843.1.S1_at--591--971Chr09:13402872..13402896 (25 bp)
AGGAGTTGGCTCAAGCTTCGAGAAT
LOC_Os09g22130
OsAffx.17843.1.S1_at--319--2991Chr09:13402909..13402933 (25 bp)
AATGTCGGACTTCCAGCCAGGAGCC
LOC_Os09g22130
OsAffx.17843.1.S1_at--80--9891Chr09:13402936..13402960 (25 bp)
TACTATCCAGCCGACAACTCAAGTT
LOC_Os09g22130
OsAffx.17843.1.S1_at--141--91Chr09:13402966..13402990 (25 bp)
ATTCCTACCTGGATCTTTGCCGATT
LOC_Os09g22130
Target Sequence 
GCTGTTCATCATGCATTGGCCAATCAATCCGGTATGCTAGTCAACACAATGTCAACGGTGGTTAAGTCCATGCTTGATGG
CACCATCTATAATGCTGCTCAAGGACCGATTTTTCGTCAACACATCGGCTCCCGTGAGAACAACTTCATTGGCGCCATCG
ACATCAGCTCTTCCAACATCTTCAGCGCCAATGATCCTGACAAAACAGCAGGAGGAGGAGTTGGCTCAAGCTTCGAGAAT
GAAGTAACCACCAATGTCGGACTTCCAGCCAGGAGCCAATACTATCCAGCCGACAACTCAAGTTCCTCCATTCCTACCTG
GATCTTTGCCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis