Browse Element(s) Details


OsAffx.17868.1.S1_at

Description tigr:9637.m02068
TID=OsAffx.17868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2419011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24140Os.17958.1.S1_at4/119+14336016..14336688expressed protein
LOC_Os09g24140OsAffx.17938.1.S1_at1/119+14336016..14336688expressed protein
LOC_Os09g24150Os.17958.1.S1_at11/119+14340178..14341852retrotransposon protein, putative, unclassified
LOC_Os09g24159Os.17958.1.S1_at1/119+14343453..14343857hypothetical protein
LOC_Os09g24170OsAffx.29995.1.S1_at10/119+14351511..14354261hypothetical protein
LOC_Os09g24180OsAffx.17867.1.S1_at10/119+14355710..14356206hypothetical protein
LOC_Os09g24190OsAffx.17868.1.S1_at11/119+14358192..14358479hypothetical protein
LOC_Os09g24200Os.7085.1.S1_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24200Os.7085.1.S1_a_at11/119+14362034..14365941DNA repair protein RAD23, putative, expressed
LOC_Os09g24210Os.57568.1.S1_at11/119+14367065..14372646expressed protein
LOC_Os09g24220OsAffx.6382.1.S1_at11/119+14377099..14385812DNA mismatch repair protein MSH6-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17868.1.S1_at--233--9911Chr09:14358223..14358247 (25 bp)
TACTACTTCTCGTCCTTTCTTGCGA
LOC_Os09g24190
OsAffx.17868.1.S1_at--158--7271Chr09:14358234..14358258 (25 bp)
GTCCTTTCTTGCGATGCACATACTG
LOC_Os09g24190
OsAffx.17868.1.S1_at--41--10711Chr09:14358242..14358266 (25 bp)
TTGCGATGCACATACTGCCGCGGCG
LOC_Os09g24190
OsAffx.17868.1.S1_at--807--8551Chr09:14358272..14358296 (25 bp)
TGGAGTCGCAGGCAACCTGACTGCA
LOC_Os09g24190
OsAffx.17868.1.S1_at--519--8951Chr09:14358289..14358313 (25 bp)
TGACTGCAGCCCTGGTGCATCTGCA
LOC_Os09g24190
OsAffx.17868.1.S1_at--524--9051Chr09:14358322..14358346 (25 bp)
TGCAGGCACAAGACCCGCTGGGCTG
LOC_Os09g24190
OsAffx.17868.1.S1_at--369--8651Chr09:14358340..14358364 (25 bp)
TGGGCTGCGACGACACCTGCCAAGG
LOC_Os09g24190
OsAffx.17868.1.S1_at--941--5631Chr09:14358351..14358375 (25 bp)
GACACCTGCCAAGGGTGCCTTGTGA
LOC_Os09g24190
OsAffx.17868.1.S1_at--977--9151Chr09:14358380..14358404 (25 bp)
TGCGCAGCTGTGTTTCGGCGAGTAC
LOC_Os09g24190
OsAffx.17868.1.S1_at--503--7431Chr09:14358389..14358413 (25 bp)
GTGTTTCGGCGAGTACTTCCTGCAC
LOC_Os09g24190
OsAffx.17868.1.S1_at--547--9331Chr09:14358424..14358448 (25 bp)
TCGCCGAGTGCTTCATCGAGCACAT
LOC_Os09g24190
Target Sequence 
TACTACTTCTCGTCCTTTCTTGCGATGCACATACTGCCGCGGCGCCGGCTGGAGTCGCAGGCAACCTGACTGCAGCCCTG
GTGCATCTGCACGAGGAGCTGCAGGCACAAGACCCGCTGGGCTGCGACGACACCTGCCAAGGGTGCCTTGTGAGGGGTGC
GCAGCTGTGTTTCGGCGAGTACTTCCTGCACCCCCTCGGCCTCGCCGAGTGCTTCATCGAGCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis