Browse Element(s) Details


OsAffx.17885.1.S1_x_at

Description tigr:9637.m02151
TID=OsAffx.17885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Armadillobeta-catenin-like repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2500011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein
LOC_Os09g24980Os.7749.1.S1_at11/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24980OsAffx.30010.1.S1_at3/119+14920681..14925282Vesicle transport v-SNARE protein, expressed
LOC_Os09g24990Os.15259.1.S1_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g24990Os.15259.1.S2_at11/119+14928156..14931396CAF1 family ribonuclease containing protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25000OsAffx.17885.1.S1_x_at11/119+14937244..14938885Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g25010OsAffx.30011.1.S1_at11/119+14944844..14947895hypothetical protein
LOC_Os09g25030NANA9+14956166..14956735hypothetical protein
LOC_Os09g25040OsAffx.17887.1.S1_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.17887.1.S1_x_at11/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g25040OsAffx.27510.2.S1_x_at1/119+14958367..14961768Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17885.1.S1_x_at--994--5751Chr09:14938409..14938433 (25 bp)
GACGTGCTCAACTGGTCCGACGAGC
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--472--9711Chr09:14938416..14938440 (25 bp)
TCAACTGGTCCGACGAGCCCGGGTG
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--506--1471Chr09:14938446..14938470 (25 bp)
AGAAGGCGGCGTACATCCTCATGGT
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--769--2671Chr09:14938571..14938595 (25 bp)
AAGCGCGCGTCGAGGATCCTCGAGA
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--304--8251Chr09:14938637..14938661 (25 bp)
GGCATCGTCGCGACAATGTCGGCCC
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--834--9331Chr09:14938644..14938668 (25 bp)
TCGCGACAATGTCGGCCCCGCAGGA
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--989--1871Chr09:14938707..14938731 (25 bp)
ACGAGGCCGGCATGAGCAACGAGAA
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--832--8251Chr09:14938743..14938767 (25 bp)
GGCAGCTGGTGCAGCAGAGCCTCCA
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--188--1531Chr09:14938755..14938779 (25 bp)
AGCAGAGCCTCCAGAGCAACATGCG
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--34--9231Chr09:14938764..14938788 (25 bp)
TCCAGAGCAACATGCGCCGCATCGT
LOC_Os09g25000
OsAffx.17885.1.S1_x_at--189--7211Chr09:14938825..14938849 (25 bp)
GTCGTCGGAGAACCTCAAGGCCCTC
LOC_Os09g25000
Target Sequence 
GACGTGCTCAACTGGTCCGACGAGCCCGGGTGCCAGGAGAAGGCGGCGTACATCCTCATGGTCCTCGCCCACCGGAGCTA
CGCCGACCGCGCCGCCATGGCGGAGGCCGGCGCCACCTCGGCGCTCCTCGAGCTCACCCTCGTCGGCACCGCGCTGGCGC
AGAAGCGCGCGTCGAGGATCCTCGAGATCCTCCGGGCCGACAAGGGCAAGCAGGTTGCCGACGCCGCCGGCATCGTCGCG
ACAATGTCGGCCCCGCAGGAGCGCGGCGGCGGCGGCGGCGCGCGCCAAGAAGAGGCCGACGAGGCCGGCATGAGCAACGA
GAAGCGCGCCGTGCGGCAGCTGGTGCAGCAGAGCCTCCAGAGCAACATGCGCCGCATCGTGCGCCGCGCCCGCCTCCCGC
AGGACCTCGCGCCGCCGTCGTCGGAGAACCTCAAGGCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17885.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis