Browse Element(s) Details


OsAffx.17941.2.S1_at

Description tigr:9637.m02468
TID=OsAffx.17941.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable integral membrane protein T8L23.9 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2798010/11emp24/gp25L/p24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27910Os.51676.1.S1_at11/119+16969179..16970670Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27920OsAffx.6422.1.S1_at11/119+16971342..16972288hypothetical protein
LOC_Os09g27930OsAffx.30103.4.S1_s_at11/119+16972783..16974635UBiQuitin family member, putative, expressed
LOC_Os09g27940Os.54580.1.S1_at11/119+16976481..16977927Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g27950Os.23468.1.A1_at11/119+16979036..16982866Avr9 elicitor response protein, putative, expressed
LOC_Os09g27960Os.9325.1.S1_at11/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27960Os.9325.2.S1_at5/119+16987172..16989405Uncharacterised protein family containing protein, expressed
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed
LOC_Os09g28040Os.24721.1.S1_at9/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_x_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17941.2.S1_at--1105--4231NONE
CCGTCAAGACGGTAGAGGCTGCAAC
NONE
OsAffx.17941.2.S1_at--165--9191Chr09:16997343..16997751 (25 bp)
TGCCAAGGTTACATCCCCTTTTGGA
LOC_Os09g27980
OsAffx.17941.2.S1_at--440--9291Chr09:16997740..16997764 (25 bp)
TCCCCTTTTGGAGACATTGTACATC
LOC_Os09g27980
OsAffx.17941.2.S1_at--662--2891Chr09:16997773..16997797 (25 bp)
AAGGTTTCCACAGGCCAGTTTTCAT
LOC_Os09g27980
OsAffx.17941.2.S1_at--427--6811Chr09:16997790..16997814 (25 bp)
GTTTTCATTCACAACTGCAGAAGCA
LOC_Os09g27980
OsAffx.17941.2.S1_at--647--951Chr09:16997814..16997838 (25 bp)
AGGAAACTACTTGGCTTGCTTCTCG
LOC_Os09g27980
OsAffx.17941.2.S1_at--513--1171Chr09:16998043..16998067 (25 bp)
AGTCAAGCTTGAAACCTCTGTCCAA
LOC_Os09g27980
OsAffx.17941.2.S1_at--262--2431Chr09:16998078..16998102 (25 bp)
AAAACCTGCTCTTGCTGAGATCCAA
LOC_Os09g27980
OsAffx.17941.2.S1_at--614--1391Chr09:16998233..16998257 (25 bp)
AGACGAATGCTAGGGCTACATGGTT
LOC_Os09g27980
OsAffx.17941.2.S1_at--539--4971Chr09:16998260..16998284 (25 bp)
GCATCATATCACTCATTGTTTGCAT
LOC_Os09g27980
OsAffx.17941.2.S1_at--477--251Chr09:16998286..16998310 (25 bp)
ATAGTCTCAGTTTTGCAACTTTGGC
LOC_Os09g27980
Target Sequence 
CCGTCAAGACGGTAGAGGCTGCAACGAAGTTCCTTTCCTTTTGCGACCCCGAAATGGCTAGCCCCTGCCAAGGTTTGCTT
GAGGAGGTCCGTTGCAACCATATCCACCTGGAACGAAGAGCTATACCCATAAGCTCCAGATTCGGTACCCCTGCCAAGGT
TACATCCCCTTTTGGAGACATTGTACATCATAAACAAAAGGTTTCCACAGGCCAGTTTTCATTCACAACTGCAGAAGCAG
GAAACTACTTGGCTTGCTTCTCGGCTGATGGTCGGAACAAGAGGTTAGTGGTGAAACTAAATCTTGACTGGAGAGTTGGT
ATTGCAACAAAAGATTGGGATTCTGTTGCTAAAAAGGAAAAGCTCGAGGGAGTTGAACTAGAATTAGTCAAGCTTGAAAC
CTCTGTCCAAGCAATACATGAAAACCTGCTCTTGCTGAGATCCAAAGAAGCAAATATGAGAGATACCAGTGAGAAGACGA
ATGCTAGGGCTACATGGTTGAGCATCATATCACTCATTGTTTGCATTATAGTCTCAGTTTTGCAACTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17941.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis