Browse Element(s) Details


OsAffx.17986.1.S1_at

Description tigr:9637.m02857
TID=OsAffx.17986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17986.1.S1_at--789--6951Chr09:19445708..19445829 (25 bp)
GTAGCTTCACACTGCGAGATGGTCG
LOC_Os09g32580
OsAffx.17986.1.S1_at--693--2631Chr09:19445667..19445691 (25 bp)
AACCAAACTTCTGTACCTCAAGCAT
LOC_Os09g32580
OsAffx.17986.1.S1_at--320--1751Chr09:19445653..19445677 (25 bp)
ACCTCAAGCATCTGACTATTTCTCT
LOC_Os09g32580
OsAffx.17986.1.S1_at--897--831Chr09:19445622..19445646 (25 bp)
ATGGACCTTTTCTCGAGCCTATGAC
LOC_Os09g32580
OsAffx.17986.1.S1_at--797--6011Chr09:19445408..19445432 (25 bp)
GAGAGTTCCTCACATCTAAGACAGA
LOC_Os09g32580
OsAffx.17986.1.S1_at--78--2591Chr09:19445283..19445307 (25 bp)
AACGTCACTTGAGCGCCTTGAATTG
LOC_Os09g32580
OsAffx.17986.1.S1_at--392--31Chr09:19445262..19445286 (25 bp)
ATTGGACACCACTCATGGCAATGCT
LOC_Os09g32580
OsAffx.17986.1.S1_at--241--6331Chr09:19445216..19445240 (25 bp)
GATGAATGCTTTCCTGTGAGCCAGG
LOC_Os09g32580
OsAffx.17986.1.S1_at--242--5871Chr09:19445199..19445223 (25 bp)
GAGCCAGGGTGTTCTCACAGAATCC
LOC_Os09g32580
OsAffx.17986.1.S1_at--240--2151Chr09:19445183..19445207 (25 bp)
ACAGAATCCCCTAGAGCAGTCTTGG
LOC_Os09g32580
OsAffx.17986.1.S1_at--603--8671Chr09:19445109..19445133 (25 bp)
TGTGTTGGAACCATGCAGCCGGTGC
LOC_Os09g32580
Target Sequence 
GTAGCTTCACACTGCGAGATGGTCGACACACCAATGCTACCAACCAAACTTCTGTACCTCAAGCATCTGACTATTTCTCT
TTTTGCATGGACCTTTTCTCGAGCCTATGACTATTTTTCTCTGGTTTCATTTTTTGATGCTTCTCCTTTGTTGGAGGTAT
TCGTCTTGGATATATATCAGGAAAGCATGGAGCATGAATCAATCTTTGAGAGTTCCTCACATCTAAGACAGATGCCAGAA
TATCACCATGAACACCTCAAGTCCGTGACGATCAGCGGCTTCTGCTCCGCGAAGAGCTTGGTCGAGCTAACATGCCATAT
TGTTGAGAACACAACGTCACTTGAGCGCCTTGAATTGGACACCACTCATGGCAATGCTAGGTGTTCTGAAGACAGTTCTG
ATGAATGCTTTCCTGTGAGCCAGGGTGTTCTCACAGAATCCCCTAGAGCAGTCTTGGCTATCAGAGGATACATCGAGGGG
AAAATTCCCACCAATGTGAAGTTAAATGTGTTGGAACCATGCAGCCGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis