Browse Element(s) Details


OsAffx.18059.1.S1_at

Description tigr:9637.m03380
TID=OsAffx.18059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g394747/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein
LOC_Os09g39560Os.7132.1.S1_at11/119+22707156..22709078Genetic modifier, putative, expressed
LOC_Os09g39570Os.5640.1.S1_at11/119+22712810..22716059Beta-amylase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18059.1.S1_at--737--7731Chr09:22687518..22687542 (25 bp)
GGTGGAGAGCCCATCCAGGCCCAGC
NONE
OsAffx.18059.1.S1_at--818--891Chr09:22687534..22687558 (25 bp)
AGGCCCAGCCCAGTAGACTGGATTG
NONE
OsAffx.18059.1.S1_at--816--5731Chr09:22687549..22687573 (25 bp)
GACTGGATTGGCCTGAAGAAGCCAT
NONE
OsAffx.18059.1.S1_at--870--2651NONE
AAGCCATGGGCGATGAAGCTAGGAA
NONE
OsAffx.18059.1.S1_at--861--2752Chr09:22688547..22688571 (25 bp)
AAGACTGCCTCCTTCAGCCGGTGGT
LOC_Os09g39474
OsAffx.18059.1.S1_at--228--8031Chr09:22688617..22688641 (25 bp)
GGAGGTTTCTGGGATGCTGCAAAAC
LOC_Os09g39474
OsAffx.18059.1.S1_at--855--7651Chr09:22688627..22688651 (25 bp)
GGGATGCTGCAAAACAAACTCTTCT
LOC_Os09g39474
OsAffx.18059.1.S1_at--964--2191Chr09:22688640..22688664 (25 bp)
ACAAACTCTTCTTACGATCGTCGGT
LOC_Os09g39474
OsAffx.18059.1.S1_at--638--151Chr09:22688665..22688775 (25 bp)
ATTATCGCCGCGTTTTTCCTGATTG
LOC_Os09g39474
OsAffx.18059.1.S1_at--944--9331Chr09:22688669..22688779 (25 bp)
TCGCCGCGTTTTTCCTGATTGCAAA
LOC_Os09g39474
OsAffx.18059.1.S1_at--181--71Chr09:22688772..22688796 (25 bp)
ATTGCAAACTTCAATGTGCTGGTAG
LOC_Os09g39474
Target Sequence 
GGTGGAGAGCCCATCCAGGCCCAGCCCAGTAGACTGGATTGGCCTGAAGAAGCCATGGGCGATGAAGCTAGGAAAGCAGT
GGAAAATGCCCTGGGGTGGAAGAAGACGGGGCTTCCAAAATTGGGTATGCGAATTGAAAGAAGGCAGCAAAGACTGCCTC
CTTCAGCCGGTGGTGGAGGATGGTCTGGAGGAGGTGGTTGGTTCAGGTGGTTCAGCAGTGGAGGTTTCTGGGATGCTGCA
AAACAAACTCTTCTTACGATCGTCGGTATTATCGCCGCGTTTTTCCTGATTGCAAACTTCAATGTGCTGGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis