Browse Element(s) Details


OsAffx.18075.1.S1_x_at

Description tigr:9638.m00074
TID=OsAffx.18075.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative hsr201 hypersensitivity-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0170010/11expressed protein
LOC_Os04g098001/11SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01660OsAffx.30230.1.S1_at11/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01660OsAffx.18530.1.S1_at1/1110+419568..422146Transferase family protein, expressed
LOC_Os10g01670OsAffx.18072.1.S1_at10/1110+428685..429710hypothetical protein
LOC_Os10g01680OsAffx.30232.2.S1_at11/1110+432817..437107Transferase family protein
LOC_Os10g01680OsAffx.30232.3.S1_x_at2/1110+432817..437107Transferase family protein
LOC_Os10g01690OsAffx.30232.3.S1_x_at11/1110+440134..441438Transferase family protein
LOC_Os10g01700OsAffx.18075.1.S1_x_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.18075.1.S1_at10/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.3.S1_x_at3/1110+442877..444712expressed protein
LOC_Os10g01700OsAffx.30232.1.S1_x_at1/1110+442877..444712expressed protein
LOC_Os10g01710OsAffx.30231.1.S1_at11/1110+445415..445923hypothetical protein
LOC_Os10g01720OsAffx.30232.1.S1_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.1.S1_x_at9/1110+452712..456562Transferase family protein
LOC_Os10g01720OsAffx.30232.3.S1_x_at5/1110+452712..456562Transferase family protein
LOC_Os10g01730OsAffx.18076.1.S1_at11/1110+458063..460201hypothetical protein
LOC_Os10g01740NANA10+461662..462058hypothetical protein
LOC_Os10g01750OsAffx.437.1.S1_x_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01750OsAffx.437.1.S1_at11/1110+466831..471811retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009294biological_processDNA mediated transformation
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18075.1.S1_x_at--15--3951Chr10:443072..443096 (25 bp)
CGGCTCTTCGCGGAGCTGGACTTTG
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--320--2591Chr10:443143..443167 (25 bp)
AACGTTCCTGGTGACGTGCAGGAAC
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--477--9172Chr10:443205..443229 (25 bp)
TGCCGCCTCCGGTGAAGTTGAGGTT
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--141--3871NONE
CTGATGATGAGCATGCCGCACGGCG
NONE
OsAffx.18075.1.S1_x_at--924--6071Chr10:444391..444415 (25 bp)
GAGTACGTACCTCCCTCTTAGCATG
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--159--3811Chr10:444401..444425 (25 bp)
CTCCCTCTTAGCATGCGTGGAAGAC
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--177--3531Chr10:444412..444436 (25 bp)
CATGCGTGGAAGACGGTGGCTACAC
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--1032--3551Chr10:444475..444499 (25 bp)
CATCACCGATGCCAGTGCCAGCGAT
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--623--591Chr10:444483..444507 (25 bp)
ATGCCAGTGCCAGCGATCTGTGCGG
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--873--4171Chr10:444519..444543 (25 bp)
CCCAGATGATGGAGCTGGTCTGCGA
LOC_Os10g01700
OsAffx.18075.1.S1_x_at--467--9291Chr10:444603..444627 (25 bp)
TCCGTGGGCACGACACGGTGTTCGA
LOC_Os10g01700
Target Sequence 
CGGCTCTTCGCGGAGCTGGACTTTGGGCGCGGGGAGTGGGTGGTTAGCGGCATGGCACAGCCGATGCTGGCAACGTTCCT
GGTGACGTGCAGGAACGGCGACGACGAGGACGCGGTGGCGGCATCGATGCTGTTGCCGCCTCCGGTGAAGTTGAGGTTTG
CAGAGGAGCTTGCTGGGCTGATGATGAGCATGCCGCACGGCGGCGCTGCCCTATGCCCCGCACCGGCGAGTACGTACCTC
CCTCTTAGCATGCGTGGAAGACGGTGGCTACACATCCCGGAGGGGTACTACGGCAACGCACTCGCATACTCCATCACCGA
TGCCAGTGCCAGCGATCTGTGCGGCGCGACGCTGGCCCAGATGATGGAGCTGGTCTGCGAGGCGAGGCTACGGGTGACGG
AGGAGTACGGGAGATCGACAGTGGACTTGATGGCGTCGCTCCGTGGGCACGACACGGTGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18075.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis