Browse Element(s) Details


OsAffx.18129.2.S1_at

Description gb:NM_194755.1
DB_XREF= gi:37530869
TID=OsAffx.18129.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0013J21.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0451011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04480OsAffx.30278.1.S1_at11/1110+2106745..2107886hypothetical protein
LOC_Os10g04490OsAffx.18129.1.S1_at10/1110+2112993..2115820hypothetical protein
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18129.2.S1_at--1106--8871Chr10:2127991..2128015 (25 bp)
TGAGTTTGTCATCCTTCTGACCGGA
LOC_Os10g04510
OsAffx.18129.2.S1_at--525--3651Chr10:2128004..2128028 (25 bp)
CTTCTGACCGGATGTGAGCGCATGT
LOC_Os10g04510
OsAffx.18129.2.S1_at--340--2511Chr10:2128095..2128119 (25 bp)
AACATCTAATTAACTTCTTGCTGGA
LOC_Os10g04510
OsAffx.18129.2.S1_at--9--5971Chr10:2128118..2128142 (25 bp)
GAGAACAACAATATTGGTCCTCCAC
LOC_Os10g04510
OsAffx.18129.2.S1_at--159--7011Chr10:2128145..2128169 (25 bp)
GTACTACCAATTATCGGTGGTCGTG
LOC_Os10g04510
OsAffx.18129.2.S1_at--576--5151Chr10:2128203..2128227 (25 bp)
GCAACGATGATAGGGTTCGATCTCA
LOC_Os10g04510
OsAffx.18129.2.S1_at--1107--7671Chr10:2128215..2128239 (25 bp)
GGGTTCGATCTCATTTCTTTTTTAT
LOC_Os10g04510
OsAffx.18129.2.S1_at--38--7631Chr10:2128348..2128372 (25 bp)
GGGAACATTTCATTCATCTCTTATG
LOC_Os10g04510
OsAffx.18129.2.S1_at--1088--6511Chr10:2128428..2128452 (25 bp)
GATTTGGAACTGTCAGGCCCATTAC
LOC_Os10g04510
OsAffx.18129.2.S1_at--463--9631Chr10:2128440..2128464 (25 bp)
TCAGGCCCATTACTCTTGACAGAAT
LOC_Os10g04510
OsAffx.18129.2.S1_at--409--6491Chr10:2128482..2128506 (25 bp)
GATACCTATTGAAGACGCTCACATT
LOC_Os10g04510
Target Sequence 
TGAGTTTGTCATCCTTCTGACCGGATGTGAGCGCATGTCCCATAGGCCCTATGATACCTATCTTTACATCGACAATTTCA
TGTTTGGTCGACATGTGGAAAAGCAACATCTAATTAACTTCTTGCTGGAGAACAACAATATTGGTCCTCCACCTGTACTA
CCAATTATCGGTGGTCGTGGAGTTGGGAAGAAAACACTTGTTACACATGTATGCAACGATGATAGGGTTCGATCTCATTT
CTTTTTTATTTTCCATATCAATGGAGAGAACCTTGGGGAAATTACCGAAAATAAAAATATGTCAGAAAGGACATTGGTAA
TTGTTGAGTTTGTTTCAGATGTAGATGACAACGACTGGGGAACATTTCATTCATCTCTTATGAGCCTTAACAGAGGAAAC
AAAGTGATAATCTTGACTAGAATTAAGAAATTGGAGAGATTTGGAACTGTCAGGCCCATTACTCTTGACAGAATGGTGCA
TGAGGAGTACAGATACCTATTGAAGACGCTCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18129.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis