Browse Element(s) Details


OsAffx.18185.1.S1_s_at

Description tigr:9638.m00793
TID=OsAffx.18185.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0920011/11hypothetical protein
LOC_Os10g206004/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein
LOC_Os10g09180NANA10+4723294..4725385hypothetical protein
LOC_Os10g09190OsAffx.30355.1.S1_at11/1110+4727843..4728202hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein
LOC_Os10g09210NANA10+4743050..4743730transposon protein, putative, unclassified
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18185.1.S1_s_at--1069--6251Chr10:4733318..4733342 (25 bp)
GATGGGCACCTGGTTGTTCTTGTTC
LOC_Os10g09200
OsAffx.18185.1.S1_s_at--192--8651Chr10:4733320..4733344 (25 bp)
TGGGCACCTGGTTGTTCTTGTTCTT
LOC_Os10g09200
OsAffx.18185.1.S1_s_at--417--5091Chr10:4733323..4733347 (25 bp)
GCACCTGGTTGTTCTTGTTCTTTTC
LOC_Os10g09200
OsAffx.18185.1.S1_s_at--175--3912Chr10:4733327..4733351 (25 bp)
CTGGTTGTTCTTGTTCTTTTCTGAT
LOC_Os10g09200
OsAffx.18185.1.S1_s_at--495--6631Chr10:4733330..4733354 (25 bp)
GTTGTTCTTGTTCTTTTCTGATGGG
LOC_Os10g09200
OsAffx.18185.1.S1_s_at--345--6812Chr10:10052095..10052119 (25 bp)
GTTTATTGCTTCGTGCACAAGGTTC
LOC_Os10g20600
OsAffx.18185.1.S1_s_at--303--72Chr10:10052099..10052123 (25 bp)
ATTGCTTCGTGCACAAGGTTCCTGT
LOC_Os10g20600
OsAffx.18185.1.S1_s_at--47--4111Chr10:4734420..4734444 (25 bp)
CGAATGCATCCGCTTCCCGGAGCAT
LOC_Os10g09200
OsAffx.18185.1.S1_s_at--118--551Chr10:4734427..4734451 (25 bp)
ATCCGCTTCCCGGAGCATCAGTTAT
LOC_Os10g09200
OsAffx.18185.1.S1_s_at--710--4912Chr10:10052141..10052165 (25 bp)
GCTTCCCGGAGCATCAGTTATGCGT
LOC_Os10g20600
OsAffx.18185.1.S1_s_at--967--10652Chr10:10052143..10052167 (25 bp)
TTCCCGGAGCATCAGTTATGCGTGG
LOC_Os10g20600
Target Sequence 
GATGGGCACCTGGTTGTTCTTGTTCTTTTCTGATGGGGCAGATGGGATGGAGACTTGTGGGTGGAGCCGTGGAGGCGACA
AGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCCGCTTCCCGGAGCATCAGTTATGCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18185.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis