Browse Element(s) Details


OsAffx.18322.1.S1_s_at

Description gb:NM_195945.1
DB_XREF= gi:37533249
TID=OsAffx.18322.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative Cytochrome P450 (OSJNBb0023M11.14), mRNA.
PROD=putative Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2105011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21000Os.7485.1.S1_at11/1110+10306061..10310495nucleoside phosphatase family protein, putative, expressed
LOC_Os10g21009NANA10+10313759..10314243NA
LOC_Os10g21020OsAffx.6713.2.S1_s_at11/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.2.S1_at10/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.1.S1_at7/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21040OsAffx.18322.2.S1_s_at11/1110+10327491..10328812hypothetical protein
LOC_Os10g21040OsAffx.18322.3.A1_at8/1110+10327491..10328812hypothetical protein
LOC_Os10g21050OsAffx.18322.1.S1_s_at11/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.28081.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.20024.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21060NANA10+10333352..10334840hypothetical protein
LOC_Os10g21070Os.46697.1.S1_at11/1110+10335538..10344589retrotransposon protein, putative, unclassified, expressed
LOC_Os10g21070Os.54169.1.S1_at1/1110+10335538..10344589retrotransposon protein, putative, unclassified, expressed
LOC_Os10g21080Os.46785.2.S1_x_at3/1110+10353814..10361676retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21080OsAffx.442.1.S1_x_at1/1110+10353814..10361676retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21080OsAffx.30226.2.S1_x_at1/1110+10353814..10361676retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18322.1.S1_s_at--465--851Chr10:10331601..10331625 (25 bp)
ATGGCAGAGCTACTACAGGACCGAG
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--437--5471Chr10:10331553..10331577 (25 bp)
GAACTCAAGAAGGTTCTCGGCTCCA
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--103--9451Chr10:10331537..10331561 (25 bp)
TCGGCTCCAAAACTCATGCTGAATA
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--52--9011Chr10:10331518..10331542 (25 bp)
TGAATACGCCGATATGGACCGTCTT
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--388--3971Chr10:10331450..10331474 (25 bp)
CGGTGGTGCCGATAGTGCCCAACGT
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--635--6031Chr10:10331409..10331433 (25 bp)
GAGATACATGGCCACGTCGTGCCCA
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--1115--7631Chr10:10331382..10331406 (25 bp)
GGGAGCACCATCCTGGTGAACCTGT
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--801--5871Chr10:10331325..10331349 (25 bp)
GAGCCGAATAGGTTCCTGCCGGAGA
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--555--5611Chr10:10331179..10331203 (25 bp)
GACAAGGATGCTGCACGCAATGCTG
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--656--9111Chr10:10331147..10331171 (25 bp)
TGCTGCATCGCTTCGAGTGGACGCT
LOC_Os10g21050
OsAffx.18322.1.S1_s_at--628--8632Chr10:10331077..10331101 (25 bp)
TGGGTTGACGATGACCATGGCCACC
LOC_Os10g21050
Target Sequence 
ATGGCAGAGCTACTACAGGACCGAGAGACCATGAGAAAGCTACAGGAAGAACTCAAGAAGGTTCTCGGCTCCAAAACTCA
TGCTGAATACGCCGATATGGACCGTCTTCCCTACCTCCGGGCAGTCATCAAGGAGACGCTCCGGCTGCACCCGGTGGTGC
CGATAGTGCCCAACGTGGCCGAGGAGATGGTGGAGATACATGGCCACGTCGTGCCCAGGGGGAGCACCATCCTGGTGAAC
CTGTGGGCCGTGCATCGCGACGCCGAGGCGTGGCCGGAGCCGAATAGGTTCCTGCCGGAGAGGTTCATGCTCCGGCAGCA
TGGCCAGGAGGCCGCCGGCCGTGCCCTGGGTACGGCGACGACGGAGTTCGGGCTGATCCCGTTCAGCGCTGGGAGGCGCG
TCTGCCTCGGGCTGCCACTCGCGACAAGGATGCTGCACGCAATGCTGGGGTCGCTGCTGCATCGCTTCGAGTGGACGCTC
CCGTTGGAGGTGGAGGAAAATGGTGTGGACATGTCGGAGAATCTTGGGTTGACGATGACCATGGCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18322.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis