Browse Element(s) Details


OsAffx.18452.1.S1_at

Description gb:NM_196638.1
DB_XREF= gi:37534635
TID=OsAffx.18452.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019M20.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2969011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein
LOC_Os10g29680OsAffx.18451.1.S1_at11/1110+15107203..15108340hypothetical protein
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein
LOC_Os10g29730OsAffx.8098.1.S1_at11/1110+15129500..15130174retrotransposon protein, putative, LINE subclass
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18452.1.S1_at--1046--8351Chr10:15109330..15109354 (25 bp)
GGCGTGGCGTGGAGTACCCCTCTCC
LOC_Os10g29690
OsAffx.18452.1.S1_at--64--6991Chr10:15109398..15109422 (25 bp)
GTACGCATCGGAGGGAGATCGTCCT
LOC_Os10g29690
OsAffx.18452.1.S1_at--961--6011Chr10:15109412..15109436 (25 bp)
GAGATCGTCCTAGACGACGTTGACA
LOC_Os10g29690
OsAffx.18452.1.S1_at--438--10031Chr10:15109422..15109446 (25 bp)
TAGACGACGTTGACAAGCGCCCTCA
LOC_Os10g29690
OsAffx.18452.1.S1_at--745--2671Chr10:15109436..15109460 (25 bp)
AAGCGCCCTCACGTGGATGATGATG
LOC_Os10g29690
OsAffx.18452.1.S1_at--953--9671Chr10:15109444..15109468 (25 bp)
TCACGTGGATGATGATGCGGCCCTT
LOC_Os10g29690
OsAffx.18452.1.S1_at--506--8411Chr10:15109462..15109486 (25 bp)
GGCCCTTCTTCTACATATCGGAGTT
LOC_Os10g29690
OsAffx.18452.1.S1_at--894--231Chr10:15109476..15109500 (25 bp)
ATATCGGAGTTCGACTTCCTGCGAC
LOC_Os10g29690
OsAffx.18452.1.S1_at--670--4551Chr10:15109570..15109594 (25 bp)
GCCCATGGAGGTTCAGCTCGGTGCT
LOC_Os10g29690
OsAffx.18452.1.S1_at--840--6731Chr10:15109580..15109604 (25 bp)
GTTCAGCTCGGTGCTGACGTGCTGC
LOC_Os10g29690
OsAffx.18452.1.S1_at--432--9671Chr10:15109609..15109633 (25 bp)
TCAGCCGGCTGTGGAGATCGACGAC
LOC_Os10g29690
Target Sequence 
GGCGTGGCGTGGAGTACCCCTCTCCATCGGCGTCGATGCGGCCTCTCCGCTGGTGCCCGCGACCGCGAGTACGCATCGGA
GGGAGATCGTCCTAGACGACGTTGACAAGCGCCCTCACGTGGATGATGATGCGGCCCTTCTTCTACATATCGGAGTTCGA
CTTCCTGCGACTGCGACCCCGCCACCGGAGGACGTCGCTGGCGACGACATGATCGACGCACCCCCGCCGCCGCCGCCCCC
GCCCATGGAGGTTCAGCTCGGTGCTGACGTGCTGCCTCCTCAGCCGGCTGTGGAGATCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis