Browse Element(s) Details


OsAffx.18466.1.S1_at

Description tigr:9638.m02626
TID=OsAffx.18466.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3057011/11Cytokinin-O-glucosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed
LOC_Os10g30560NANA10+15564672..15566669UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g30570OsAffx.18466.1.S1_at11/1110+15570168..15573423Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os10g30580Os.10607.1.S1_at11/1110+15582075..15586577Cell division cycle protein 48 homolog, putative, expressed
LOC_Os10g30590Os.46315.3.S1_x_at11/1110+15588892..15590373pentatricopeptide, putative
LOC_Os10g30600Os.46674.1.S1_at10/1110+15591736..15594562Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18466.1.S1_at--142--1811Chr10:15573221..15573245 (25 bp)
ACCGCCAGATCACCTCGAGCGGTGG
LOC_Os10g30570
OsAffx.18466.1.S1_at--660--1711Chr10:15573083..15573107 (25 bp)
ACCACGACCAGTACATGGAGGGCGT
LOC_Os10g30570
OsAffx.18466.1.S1_at--510--9151Chr10:15572924..15572948 (25 bp)
TGCCGTACGTCTCGTTCTGGACGGA
LOC_Os10g30570
OsAffx.18466.1.S1_at--667--1931Chr10:15572904..15572928 (25 bp)
ACGGAGCCGGCGATCATCTTCAGCC
LOC_Os10g30570
OsAffx.18466.1.S1_at--88--2111Chr10:15572870..15572894 (25 bp)
ACATGGACCTGCTCACCAAGAACGG
LOC_Os10g30570
OsAffx.18466.1.S1_at--175--2751Chr10:15572853..15572877 (25 bp)
AAGAACGGCCACTTCAACTGCAAAG
LOC_Os10g30570
OsAffx.18466.1.S1_at--530--2171Chr10:15570294..15570318 (25 bp)
ACACGCATCAATCCTCGATGCTGAT
LOC_Os10g30570
OsAffx.18466.1.S1_at--8--6331Chr10:15570278..15570302 (25 bp)
GATGCTGATAGTATCCCCCGTATTC
LOC_Os10g30570
OsAffx.18466.1.S1_at--575--111Chr10:15570257..15570281 (25 bp)
ATTCTTTCCCTCACCGGCGATAGTA
LOC_Os10g30570
OsAffx.18466.1.S1_at--119--4291Chr10:15570249..15570273 (25 bp)
CCTCACCGGCGATAGTATGGAAGTT
LOC_Os10g30570
OsAffx.18466.1.S1_at--830--491Chr10:15570207..15570231 (25 bp)
ATCGGAGTCCGAAAAGTCAGCAAGA
LOC_Os10g30570
Target Sequence 
ACCGCCAGATCACCTCGAGCGGTGGCGGCCATGGCGTCGGCGGCGGCGACGACATCTTCGCCGGCGCGGGCGGCGGCGCG
ATGATCAGGTACGAGCTGGTGAGCGACGGGTTCCCGCTGGGGTTCGACCGGTCGCGGAACCACGACCAGTACATGGAGGG
CGTCCTCCACGTGCTCCCCGCGCACGTCGACGAGCTGCTGCGCCGCGTCGTCGGCGACGGGGACGCCGCCGCCGCCACGT
GCCTCGTCGCCGACACCTTCTTCGTGTGGCCGGCGACGCTCGCCAGGAAGCTCGGCGTGCCGTACGTCTCGTTCTGGACG
GAGCCGGCGATCATCTTCAGCCTCTACTACCACATGGACCTGCTCACCAAGAACGGCCACTTCAACTGCAAAGCCGCTCC
GTCCTCCTCCTCCCTCCCTTCCCCGATTCTTCCACACGCATCAATCCTCGATGCTGATAGTATCCCCCGTATTCTTTCCC
TCACCGGCGATAGTATGGAAGTTGATGAGGTCATGGGGTCATCGGAGTCCGAAAAGTCAGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis