Browse Element(s) Details


OsAffx.18467.1.S1_s_at

Description tigr:9638.m02642
TID=OsAffx.18467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3071911/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30680OsAffx.30613.1.S1_x_at11/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_x_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30690OsAffx.8079.1.S1_at11/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.53952.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.8736.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30700OsAffx.8078.1.S1_at11/1110+15660389..15661583hypothetical protein
LOC_Os10g30719OsAffx.18467.1.S1_s_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30719Os.46487.1.S1_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30750Os.5293.1.S1_at11/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750OsAffx.25182.1.S1_s_at1/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760Os.24630.1.A1_at11/1110+15692353..15695114pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18467.1.S1_s_at--217--4271Chr10:15668722..15668746 (25 bp)
CCGGCGATCTTTCCGGCGGACGGTG
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--462--9371Chr10:15668779..15668803 (25 bp)
TCGACGATCTTCTTGCCAGATCTTC
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--385--5771Chr10:15668781..15668805 (25 bp)
GACGATCTTCTTGCCAGATCTTCTA
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--1041--431Chr10:15668785..15668809 (25 bp)
ATCTTCTTGCCAGATCTTCTAGACG
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--417--10551Chr10:15668788..15668812 (25 bp)
TTCTTGCCAGATCTTCTAGACGGGA
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--772--9191Chr10:15668792..15668816 (25 bp)
TGCCAGATCTTCTAGACGGGAGCTT
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--625--3431Chr10:15668795..15668819 (25 bp)
CAGATCTTCTAGACGGGAGCTTTCT
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--683--9551Chr10:15668799..15668823 (25 bp)
TCTTCTAGACGGGAGCTTTCTTTCT
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--892--9471Chr10:15668802..15668826 (25 bp)
TCTAGACGGGAGCTTTCTTTCTGAC
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--1160--1391Chr10:15668805..15668829 (25 bp)
AGACGGGAGCTTTCTTTCTGACGAT
LOC_Os10g30719
OsAffx.18467.1.S1_s_at--999--9531Chr10:15668817..15668841 (25 bp)
TCTTTCTGACGATGATCTAAGCCAG
LOC_Os10g30719
Target Sequence 
CCGGCGATCTTTCCGGCGGACGGTGGCGGCGGCGGCGTCAGGAGGAGTCCGGCGGCGTCGACGATCTTCTTGCCAGATCT
TCTAGACGGGAGCTTTCTTTCTGACGATGATCTAAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18467.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis