Browse Element(s) Details


OsAffx.18481.1.S1_x_at

Description tigr:9638.m02766
TID=OsAffx.18481.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pectate lyase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3191011/11pectate lyase 12 precursor, putative, expressed
LOC_Os07g389802/11hypothetical protein
LOC_Os02g123001/11Pectate lyase precursor, putative, expressed
LOC_Os06g052091/11Pectate lyase precursor, putative, expressed
LOC_Os06g052721/11Pectate lyase precursor, putative
LOC_Os04g050501/11pectate lyase 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein
LOC_Os10g31880NANA10+16416050..16417447retrotransposon protein, putative, unclassified
LOC_Os10g31890NANA10+16418455..16419662retrotransposon protein, putative, unclassified
LOC_Os10g31900Os.5866.1.S1_at11/1110+16421355..16425794Splicing factor 3B subunit 4, putative, expressed
LOC_Os10g31910OsAffx.18481.1.S1_x_at11/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31910OsAffx.18481.2.S1_at1/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18481.1.S1_x_at--941--9031Chr10:16430493..16430517 (25 bp)
TGCAGCGGATGCCTCGGTGCAGGAG
LOC_Os10g31910
OsAffx.18481.1.S1_x_at--1087--3471Chr10:16430474..16430498 (25 bp)
CAGGAGGGGGTACTTCCACATCGTC
LOC_Os10g31910
OsAffx.18481.1.S1_x_at--766--9394Chr06:2377937..2377956 (20 bp)
TCGTCAACAACGACTACACGGCGTG
LOC_Os06g05272
OsAffx.18481.1.S1_x_at--872--9851Chr10:16430440..16430464 (25 bp)
TACACGGCGTGGGAGATGTACGCCA
LOC_Os10g31910
OsAffx.18481.1.S1_x_at--805--11Chr10:16430416..16430440 (25 bp)
ATTGGAGGGAGCGCGAGCCCCACCA
LOC_Os10g31910
OsAffx.18481.1.S1_x_at--111--2492Chr04:2472021..2472041 (21 bp)
AACAGCCAGGGCAACCGCTACATCG
LOC_Os04g05050
OsAffx.18481.1.S1_x_at--55--6391Chr10:16430361..16430380 (20 bp)
GATCCCAACGCCAAGGAGGTGACGA
LOC_Os10g31910
OsAffx.18481.1.S1_x_at--109--2111Chr10:16429504..16429528 (25 bp)
ACATGATGGTCAACGGCGCCTTCTT
LOC_Os10g31910
OsAffx.18481.1.S1_x_at--44--7571Chr10:16429464..16429488 (25 bp)
GGGCCTCGAGGCCATCTACGACAAG
LOC_Os10g31910
OsAffx.18481.1.S1_x_at--641--7695Chr04:25910681..25910737 (25 bp)
GGGTCTGGAGTGGATCTAATTCATT
NONE
OsAffx.18481.1.S1_x_at--280--6139Chr01:19662030..19662086 (25 bp)
GAGTGGATCTAATTCATTTTGTGAG
NONE
Target Sequence 
TGCAGCGGATGCCTCGGTGCAGGAGGGGGTACTTCCACATCGTCAACAACGACTACACGGCGTGGGAGATGTACGCCATT
GGAGGGAGCGCGAGCCCCACCATCAACAGCCAGGGCAACCGCTACATCGCCCCCGCCGATCCCAACGCCAAGGAGGTGAC
GAAGCGGGTGGACACGGAGGAGGGGCAGTGGGCGGGGTGGAACTGGAGGACGGAGGGGGACATGATGGTCAACGGCGCCT
TCTTCGTCCCCTCCGGCGAGGGCCTCGAGGCCATCTACGACAAGGCCTCCAGCACCGACCCCAAGTCGTCGGCGCTCGTC
GACCAGCTCACCGCCGGCGCCGGCGTCCTCGGCGGCCCCAGAGGAGTTGGGTCTGGAGTGGATCTAATTCATTTTGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18481.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis