Browse Element(s) Details


OsAffx.18487.1.S1_at

Description tigr:9638.m02789
TID=OsAffx.18487.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative lectin receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3215011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32140OsAffx.30634.1.S1_at2/1110+16556712..16557123hypothetical protein
LOC_Os10g32150OsAffx.18487.1.S1_x_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150OsAffx.18487.1.S1_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.53480.1.S1_x_at5/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.56035.1.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.52587.2.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32160Os.46796.2.S1_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160Os.46796.2.S1_x_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160OsAffx.8050.1.S1_x_at1/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.1.S1_at11/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.2.S1_x_at7/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170OsAffx.8050.1.S1_x_at1/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32190OsAffx.6834.1.S1_at11/1110+16571924..16577087hypothetical protein
LOC_Os10g32199NANA10+16579892..16582096expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18487.1.S1_at--638--7992Chr10:16558710..16558734 (25 bp)
GGATGACTTCTCGATGAGGCTCAAC
LOC_Os10g32150
OsAffx.18487.1.S1_at--910--8931Chr10:16558707..16558731 (25 bp)
TGACTTCTCGATGAGGCTCAACGCC
LOC_Os10g32150
OsAffx.18487.1.S1_at--911--3191Chr10:16558392..16558416 (25 bp)
CAAGTCGAAGGTCCGTTGTTACAAT
LOC_Os10g32150
OsAffx.18487.1.S1_at--435--7151Chr10:16558389..16558413 (25 bp)
GTCGAAGGTCCGTTGTTACAATTGC
LOC_Os10g32150
OsAffx.18487.1.S1_at--971--5292Chr10:16558386..16558410 (25 bp)
GAAGGTCCGTTGTTACAATTGCCAG
LOC_Os10g32150
OsAffx.18487.1.S1_at--207--9592Chr10:16559863..16559887 (25 bp)
TCTTGGGAGAAGAAGTGCCATGAAA
LOC_Os10g32150
OsAffx.18487.1.S1_at--588--5372Chr10:16559855..16559879 (25 bp)
GAAGAAGTGCCATGAAACAAAGAAG
LOC_Os10g32150
OsAffx.18487.1.S1_at--957--2312Chr10:16559837..16559861 (25 bp)
AAAGAAGAACCATCAGGCGCACCTT
LOC_Os10g32150
OsAffx.18487.1.S1_at--986--5372Chr10:16559834..16559858 (25 bp)
GAAGAACCATCAGGCGCACCTTGTG
LOC_Os10g32150
OsAffx.18487.1.S1_at--63--2652Chr10:16559830..16559854 (25 bp)
AACCATCAGGCGCACCTTGTGGTTG
LOC_Os10g32150
OsAffx.18487.1.S1_at--616--4332Chr10:16559828..16559852 (25 bp)
CCATCAGGCGCACCTTGTGGTTGCG
LOC_Os10g32150
Target Sequence 
GGATGACTTCTCGATGAGGCTCAACGCCATCGTCAACAACCTCCGCATGCTCGGTGACCCACTGGAGGAGGAGAAGGTGG
TGCAGAAATTTCTTCGTGTTGTTCCTTCTCGGTTCGTGCAGGTGGCCATTGCAATCGAGCAATTGCTTGATTTGAAGACG
CTGTCCATCGAGGAGGTCACGGGGCGCCTCCGAACTGTGGAGGAGCGGTACAGGCCCGGTGACAATGATGGTGGCGTTGA
TGGCGGCCGCTTGCTCCTCACCGAAGAGCAGTGGCTGGAGCGTAGGAGAAATCGCAAGAAGAACGGCGACACGTTTGACA
AGTCGAAGGTCCGTTGTTACAATTGCCAGGAGTATGGTCACTACTCTTGGGAGAAGAAGTGCCATGAAACAAAGAAGAAC
CATCAGGCGCACCTTGTGGTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis