Browse Element(s) Details


OsAffx.18556.1.S1_at

Description gb:AK070764.1
DB_XREF= gi:32980787
TID=OsAffx.18556.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070H24, full insert sequence.
FL= gb:AK070764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3749011/11DNA excision repair protein ERCC-1, putative, expressed
LOC_Os09g223101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein
LOC_Os10g37459NANA10+19720121..19720617hypothetical protein
LOC_Os10g37468NANA10+19721410..19725783retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37500Os.2528.1.S1_x_at7/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37500Os.2528.1.S1_at4/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18556.1.S1_at--348--11Chr10:19741605..19741629 (25 bp)
CGGACTTAAGGCTGCTAGGGACTCT
LOC_Os10g37490
OsAffx.18556.1.S1_at--1029--7552Chr09:13477930..13477965 (25 bp)
GGGCCAGAAGATGCTTTTCCCGCAT
LOC_Os09g22310
OsAffx.18556.1.S1_at--1091--10291Chr10:19741564..19741588 (25 bp)
TTTCCCGCATTCCTGTTTATGCAGA
LOC_Os10g37490
OsAffx.18556.1.S1_at--867--4451Chr10:19741475..19741499 (25 bp)
GCCTAAGTTGATCCTTACTGTTCAA
LOC_Os10g37490
OsAffx.18556.1.S1_at--51--10111Chr10:19741429..19741453 (25 bp)
TAGGCGAAGCTACTAGTTTACTTGC
LOC_Os10g37490
OsAffx.18556.1.S1_at--155--2311Chr10:19741399..19741423 (25 bp)
AAAGGCAACCTTAGCTGATTCACAT
LOC_Os10g37490
OsAffx.18556.1.S1_at--320--4751Chr10:19741386..19741410 (25 bp)
GCTGATTCACATTACCTCTTGTTAT
LOC_Os10g37490
OsAffx.18556.1.S1_at--23--10811Chr10:19741368..19741392 (25 bp)
TTGTTATTTCAATCCTTCCATGTCC
LOC_Os10g37490
OsAffx.18556.1.S1_at--276--6071Chr10:19741240..19741264 (25 bp)
GAGTTCAAATGTAATGTCCCCGGTT
LOC_Os10g37490
OsAffx.18556.1.S1_at--1123--6631Chr10:19741204..19741228 (25 bp)
GTTGTAGCTGCAGCTTTTTCTGTAT
LOC_Os10g37490
OsAffx.18556.1.S1_at--992--8151Chr10:19741148..19741172 (25 bp)
GGAACACCGCCAATTTTATTAGCAA
LOC_Os10g37490
Target Sequence 
CGGACTTAAGGCTGCTAGGGACTCTGGGGCCAGAAGATGCTTTTCCCGCATTCCTGTTTATGCAGATCAGACGAGAAGGG
CTATCTCTTTACTAGAATCCGATATGATAGAAGGAGCAGCTCTAGCTTAAGCCTAAGTTGATCCTTACTGTTCAAGATGT
CTACAACACAGTAAGGTAGGCGAAGCTACTAGTTTACTTGCTTGAAAAAGGCAACCTTAGCTGATTCACATTACCTCTTG
TTATTTCAATCCTTCCATGTCCCCCATCAAAGCAGCTACAATGAGTAAGGAAGTTAGCAGATGAAAAATACCAATAATTA
GATTAGCGGTAGCTTGGTAGGAGGTCCATGACAGTCCAAAATGCTGAGTTCAAATGTAATGTCCCCGGTTTGGTAATGGT
TGTTGTAGCTGCAGCTTTTTCTGTATTTTTCCGTGTAATTTGCTCCAAAGAGAGACAGGAACACCGCCAATTTTATTAGC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis