Browse Element(s) Details


OsAffx.1860.1.S1_at

Description tigr:9629.m00038
TID=OsAffx.1860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0137011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01330NANA1+158167..160909retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g01340Os.38378.1.S1_a_at11/111+165277..167177cytokinin-repressed protein CR9, putative, expressed
LOC_Os01g01350Os.30812.1.S1_at11/111+167600..169969SNF7 family protein, expressed
LOC_Os01g01360Os.34674.1.S1_at11/111+175409..177377POT family protein, expressed
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1860.1.S1_at--229--8971Chr01:183343..183367 (25 bp)
TGAAATGCTGCACAAATCTTCTTCC
LOC_Os01g01370
OsAffx.1860.1.S1_at--980--3632Chr06:19283383..19283403 (21 bp)
CTTCCAGCTCCTTATGGCGATCATA
NONE
OsAffx.1860.1.S1_at--1047--10851Chr01:183389..183413 (25 bp)
TTGGTATAACAACCCACGAGCTGTT
LOC_Os01g01370
OsAffx.1860.1.S1_at--1150--4351Chr01:183402..183426 (25 bp)
CCACGAGCTGTTTGCACCAATGAAA
LOC_Os01g01370
OsAffx.1860.1.S1_at--704--1171Chr01:183437..183461 (25 bp)
AGTAGAACGGGCTAGTCCAGAAGTT
LOC_Os01g01370
OsAffx.1860.1.S1_at--133--7271Chr01:183451..183475 (25 bp)
GTCCAGAAGTTGAAGCCATCCAAGT
LOC_Os01g01370
OsAffx.1860.1.S1_at--109--931Chr01:183496..183520 (25 bp)
AGGCATCCATAGAGCTGACCAAGAC
LOC_Os01g01370
OsAffx.1860.1.S1_at--189--6511Chr01:183537..183561 (25 bp)
GATATGGCTGTAGGACTTGCCCGAT
LOC_Os01g01370
OsAffx.1860.1.S1_at--943--4531Chr01:183555..183579 (25 bp)
GCCCGATGCGATGGCATAGCTGCAA
LOC_Os01g01370
OsAffx.1860.1.S1_at--380--3671Chr01:183588..183612 (25 bp)
CTTTTTGTCAGGTCAGGTGGAAACT
LOC_Os01g01370
OsAffx.1860.1.S1_at--207--5551Chr01:183665..183689 (25 bp)
GAAACTCCTATCAACTAGTACATGG
LOC_Os01g01370
Target Sequence 
TGAAATGCTGCACAAATCTTCTTCCAGCTCCTTATGGCGATCATAGTTGGTATAACAACCCACGAGCTGTTTGCACCAAT
GAAATAAGCCCAGAAGTAGAACGGGCTAGTCCAGAAGTTGAAGCCATCCAAGTAGGCTGTAATAAAGTACACCAGGCATC
CATAGAGCTGACCAAGACAGACAGTGAACTGGAGGATATGGCTGTAGGACTTGCCCGATGCGATGGCATAGCTGCAAGCA
GCAAACTTTTTGTCAGGTCAGGTGGAAACTATAAACCACAAAAGGCTATATTATACTCATATCAACTGTCTAGGGGGCAA
AAGAAACTCCTATCAACTAGTACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis