Browse Element(s) Details


OsAffx.18679.1.S1_at

Description tigr:9639.m00430
TID=OsAffx.18679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0514011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein
LOC_Os11g05170OsAffx.18681.1.S1_s_at11/1111+2272259..2272979expressed protein
LOC_Os11g05180Os.24492.1.S1_at11/1111+2274583..2277474expressed protein
LOC_Os11g05180Os.20319.1.S1_at11/1111+2274583..2277474expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18679.1.S1_at--1039--991Chr11:2254927..2254951 (25 bp)
AGGATATTGCCTGCCATCAAGCCAA
LOC_Os11g05140
OsAffx.18679.1.S1_at--1143--6511Chr11:2254925..2254949 (25 bp)
GATATTGCCTGCCATCAAGCCAACA
LOC_Os11g05140
OsAffx.18679.1.S1_at--265--231Chr11:2254924..2254948 (25 bp)
ATATTGCCTGCCATCAAGCCAACAA
LOC_Os11g05140
OsAffx.18679.1.S1_at--1039--10211Chr11:2254923..2254947 (25 bp)
TATTGCCTGCCATCAAGCCAACAAT
LOC_Os11g05140
OsAffx.18679.1.S1_at--934--71Chr11:2254922..2254946 (25 bp)
ATTGCCTGCCATCAAGCCAACAATG
LOC_Os11g05140
OsAffx.18679.1.S1_at--46--10711Chr11:2254921..2254945 (25 bp)
TTGCCTGCCATCAAGCCAACAATGT
LOC_Os11g05140
OsAffx.18679.1.S1_at--562--9171Chr11:2254920..2254944 (25 bp)
TGCCTGCCATCAAGCCAACAATGTA
LOC_Os11g05140
OsAffx.18679.1.S1_at--361--4471Chr11:2254919..2254943 (25 bp)
GCCTGCCATCAAGCCAACAATGTAG
LOC_Os11g05140
OsAffx.18679.1.S1_at--136--3831Chr11:2254917..2254941 (25 bp)
CTGCCATCAAGCCAACAATGTAGTT
LOC_Os11g05140
OsAffx.18679.1.S1_at--811--4431Chr11:2254915..2254939 (25 bp)
GCCATCAAGCCAACAATGTAGTTCA
LOC_Os11g05140
OsAffx.18679.1.S1_at--770--4311Chr11:2254914..2254938 (25 bp)
CCATCAAGCCAACAATGTAGTTCAA
LOC_Os11g05140
Target Sequence 
AGGATATTGCCTGCCATCAAGCCAACAATGTAGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis